| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_5614 |
|---|
| Symbol | |
|---|
| ID | 3717690 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 6287134 |
|---|
| End bp | 6289416 |
|---|
| Gene Length | 2283 bp |
|---|
| Protein Length | 760 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | |
|---|
| Product | binding-protein dependent transport system inner membrane protein |
|---|
| Protein accession | YP_351342 |
|---|
| Protein GI | 77461835 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.536938 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.133836 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGATC TGGCCAATTC CAAAATGACT ACGAACCCTC CCAAGCGCAT TGACTTCAAT
ACGCCTGAGT TGCAACGCAA GCGCCGCATT CGCGCGCTCA AGGATCGCTT CACCCGCTGG
TACGTCCTCG TCGGCGGTCT GGCGGTGCTG GCAGCCATCA CCCTGATCTT CTTCTTCCTC
GCCTACGTGG TCGCGCCGCT GTTCAAAGGT GCTGACCTGA CTGCGAAAGA TGCAATCACC
CCGGCCTGGA TGCAGGACGC CGGCAAGCCG CTGATGATTT CGCTCGAAGA GCAGAATCAG
GTGGCCATGC GCGTTTCCGA CAAGGGCCAG GCGCTGTTCT TCGACATCGA CAGTGGCGCT
GAATTGAAGC GCGTCGATCT GCCCCTGCCG GCAGGCGCCA GTGTGACCTC GATCGGCGAA
GACCAGCCGG GCCATCCGCT GGTGGCCGTG GGCCTGTCCA ACGGCCAGGC GCTGGTGTTC
CGTCACACTT ATAAAGTCAG CTACCCGGAT GGCAAGAAGA CCATCACTCC GGCCATCGAG
TACCCGTACG GCGAGACACC GATCGCACTC AACGAAAGCG GCGGTGCGCT GGAGCATGTC
AGCCTCAATG CCACCGATTC GACCCTGATG CTGGTCGGCT CCACCGGTTC GCAACTCAAT
GTGCTGTCGC TGACCAGCGA AGAAAACATG ATGACCGGCG AAGTCACCAA CGAGCAGAAG
CGGATTGATC TGCCGCAGAT GACCGAGCCG GTGAAAAACA TCTTCGTCGA CCCGCGCCAG
CAATGGCTGT ACGTGGTCAA CGGGCGTGCC CAGGCCGACG TGTTCAGCCT GCGCGACAAG
AGCCTCAACG GACGCTACAA GCTGCTGGAA AACGCCGACG CCGAAGTCAC CGCCGCCACG
CAACTGGTGG GTGGCATCTC GCTGATCGTC GGTGACTCCA AGGGTGGTCT GGCCCAGTGG
TTCATGGCCC GCGACACCGA TGGCGAACTG CGCCTGAAGC AGATCCGCAC CTTTCAGATG
GGCACCACGC CGATCGTGGA AATCTCCGCC GAAGAACGTC GCAAGGGCTT CCTGGCCCTG
GATGCCAGCG GCAAGCTCGG CGTGTTCCAC AGCACCGCGC ACCGCACCTT GCTGGTCGAT
CAAGTCGTCG AAGGCCAGGG CCTGTTCGGC CTGTCGCCGC GCGCCAACCG CGTGATCGTC
GAAGCCGGCG GCAAGCTGCA ACCGCTGCTG CTCGACAACC CGCACCCGGA AGTTTCGTGG
AGCGCGCTGT GGAGCAAGGT CTGGTACGAG AACTACGACG AGCCTAAATA CGTCTGGCAA
TCGACTGCGG CCAATACCGA TTTCGAACCG AAACTGAGCC TGTCGCCACT GACCTTCGGC
ACCCTGAAAG CCGCGTTCTA CGCGATGCTG CTGGCTGCAC CGCTGGCCGT CGCCGCTGCG
ATCTACACCG CGTACTTCAT GGCCCCGGGC ATGCGCCGCA AGGTCAAACC GGTGATCGAG
CTGATGGAAG CGATGCCGAC GGTGATCCTT GGTTTCTTCG CCGGTCTGTT CCTCGCGCCG
TATGTGGAAG GGCACCTGCC GGGCATCTTC AGCCTGCTGA TGCTGCTGCC GATCGGCATT
CTGATCGCCG GTTTCACCTT CAGCCGCCTG CCTGAATCGA TCCGCCTGAA AGTCCCGGAC
GGCTGGGAAA GTGCGCTGCT GATCCCGGTG ATCCTGTTCG TGGGCTGGCT GTCGCTGTAC
ATGAGCCCGT TCATGGAGAA CTGGTTCTTC GGCGGTGACA TGCGCATGTG GATCTCCCAC
GACCTGGGCA TCACCTACGA CCAGCGCAAC GCTCTGGTGG TCGGTCTGGC CATGGGTTTT
GCGGTGATCC CGAACATCTA CTCGATCGCC GAAGACGCCG TGTTCAGCGT GCCGCGCGGC
CTGACCCTGG GCTCGCTGGC CCTCGGTGCC ACGCCTTGGC AGACCATGAC TCGCGTGGTG
ATCCTGACCG CCAGCCCGGG CATTTTCTCG GCACTGATGA TCGGCATGGG CCGTGCAGTC
GGCGAGACCA TGATCGTGCT GATGGCCACC GGCAACACCC CGGTCATGGA AATGAACCTG
TTCGAAGGCC TGCGCACCCT GGCCGCCAAC GTCGCGGTGG AAATGCCGGA GTCGGAAGTC
GGCGGCAGCC ACTACCGCGT GCTGTTCCTC TCGGCGCTGG TGCTGCTGTT GTTCACCTTC
GTCATGAACA CCCTCGCAGA ACTGATTCGT CAGCGTCTGC GCAAGAAATA CTCGTCGCTT
TAA
|
|---|
| Protein sequence | MNDLANSKMT TNPPKRIDFN TPELQRKRRI RALKDRFTRW YVLVGGLAVL AAITLIFFFL
AYVVAPLFKG ADLTAKDAIT PAWMQDAGKP LMISLEEQNQ VAMRVSDKGQ ALFFDIDSGA
ELKRVDLPLP AGASVTSIGE DQPGHPLVAV GLSNGQALVF RHTYKVSYPD GKKTITPAIE
YPYGETPIAL NESGGALEHV SLNATDSTLM LVGSTGSQLN VLSLTSEENM MTGEVTNEQK
RIDLPQMTEP VKNIFVDPRQ QWLYVVNGRA QADVFSLRDK SLNGRYKLLE NADAEVTAAT
QLVGGISLIV GDSKGGLAQW FMARDTDGEL RLKQIRTFQM GTTPIVEISA EERRKGFLAL
DASGKLGVFH STAHRTLLVD QVVEGQGLFG LSPRANRVIV EAGGKLQPLL LDNPHPEVSW
SALWSKVWYE NYDEPKYVWQ STAANTDFEP KLSLSPLTFG TLKAAFYAML LAAPLAVAAA
IYTAYFMAPG MRRKVKPVIE LMEAMPTVIL GFFAGLFLAP YVEGHLPGIF SLLMLLPIGI
LIAGFTFSRL PESIRLKVPD GWESALLIPV ILFVGWLSLY MSPFMENWFF GGDMRMWISH
DLGITYDQRN ALVVGLAMGF AVIPNIYSIA EDAVFSVPRG LTLGSLALGA TPWQTMTRVV
ILTASPGIFS ALMIGMGRAV GETMIVLMAT GNTPVMEMNL FEGLRTLAAN VAVEMPESEV
GGSHYRVLFL SALVLLLFTF VMNTLAELIR QRLRKKYSSL
|
|---|
| |