Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_5397 |
Symbol | |
ID | 3714751 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | - |
Start bp | 6057026 |
End bp | 6059395 |
Gene Length | 2370 bp |
Protein Length | 789 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | |
Product | S-type Pyocin |
Protein accession | YP_351125 |
Protein GI | 77461618 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 0.0784178 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00224956 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGAGTGATA TTGAAAATTA TCTTGGACCT CACAAGCAGA CCGGGCCGGG CAGATATGAA CTGGCGCCAA TACCCGTCAA GGGGGTGACG CCAGTTCGAT TGGGACAGGG TGGGTTTTTC TCGGGAAGTT GGGGGTTGAA TGAAGGGCCG CATAGAGGGA CGGGCCAAGG GTCTGGAAAA CTTGATCCGT TAACTCCATT CATCTGGAAT GATTTGATGC AGGAGCAACA GAATGCTCAG GCATATATTG ATCTTGAGTA TGCTGGAGTA TTCAGCAATA TCGGCGCGGC ATCAAATAAT GAAGTAGAGA GGGCGAGGCA AGCAGCCAGT GCTGGACTTT CTGCGGCTCA GAAGGTCAAG GCTGATCAGG AAATAACCAT TCAGGTTATT CATTCAAAGT TGTTGGAGTA TCGGGCTCAT ACCGAGATCG CTTACTCGCT GTATGGACAT AATCCATTTT TCCTGATGAA GGATTTGTCC TTCAAGAAGA TACGAGACAG TCTGGCATTG CCGGTTCCGG ATGTTTCCGT CGCCTATGCG GCCATCGACA GGGCCTATCG CTCGGCAATG GAGCTCCGGC GCCTTTCCTG GGTGATGGCC ATTATCGCCA ATCAACTTCC GGAACTGGCC GCAAGAAGAA GCCAGGTTGA AGCCGCGACT CAAACCACGA GGGACGCCCA GCAGATTCTT TCTGCCGAAA GGTTATCCGT GGTGAATCTG GAAACGAATA TTCGCCTGCA TTTCCTGCCG GGTTTTCTGG TTGAAAGAGT CGCCGCTGCA GCGGGCTCAA CCGGAGGCAG TCTCTCTCAA ACACTCACGA ATTATAAAAT CGCAGCGGAC AACATTCGTG CTGTCGAGCA GGCAGCCGTC CGGCCCTATG CAATCGCCAA TCCGGCGATC AACGCCCCGT TGAGCAAGCC TGAGCTCGAA GCGCTGAAGA ACCTGGTCGA CTTGCAGGCC ACTATCGATC TGGGCAAGCG CTGGCAGGAC TATCACGCTT CACTCCTGCA CTCGGAAAGT GCCCGGCATA TGGCAGCGGC GGCGGACGCA TTTGCCGGTC TGATTGCCCG CGCCCAAGAG GCGGAGCGTC TGCAGGAGCA GATACGCATT GCCCGGGAGC TAGAGGCCCG GCATTTGCAG GAGCAGGCGC GTATAGCCGC GGAGGTTGAA GCCAGGCGTG TTGCCGAGGA ACAGGCACGT ATTGCCGCCG AAGCAGAGGC AAGGCGCCTT GCCGAGGAAC AAGCGCGCAT GGTGGCAGAA GCCATTCGCA ACGCCCATAC CTTCCGCGCG CCAAGTGCCG CTTCGGCGAC AGGGCCGTTG TTCATGACTT CAGCTGGAGT CGTGGCAGTT GCCGAGGCTG CTGCGGCCAG TCTGCAAGCG GCGGTTCGCA GCGCCATCGC CGGGTTGGGC AGTCTTGCGG CCAGTGTCGG GGCTGGCGCG GTCGTCGGTG TTTCAGCGTT GGTCTACTCG TCGAAACTGG GCAACGGCGA ATTGCCGGAC CGTTACGCCT TCAGCACGCC GCTGTCGGAC CTCGCGCCCG ACTTCGCGCC AGATCTGCAC GCCATCGCGG CGGCTGGCGG TACGGTTGAC ATGCCTTTCC GCGTCAGTTC AAAGACCGAC GCGTACGGGC AGTCAGAGGT TTTTGTCGTC AAGACCGATG GGCGGAATAT TCCGTCGGCC GTCAGGGTGG TGGCGGCTTC CTACGACACC GAACGCAACG TCTACACCGC GACCACCTTC GATGTTCCAC CACGCACCCT GACGTGGACC CCGATCGTCA ATCCGGGAAA CAGCTCGACG ACCTCACCGG CCGGGCAGCC GGATGTGCCT GCCTATACTG GGGCGACGGT AGTCCCGGTA GAGGGACGCC TCGATTCGTT CCCGGGCGTT TTCGAAGCCG GATTCGATGA CTATGTTCTG GTGTTCCCGC AGGACTCCGG GCTGCCACCG AACTACACGA TGTTTCGGGA TCGGCGGGAG GATCCGGGTG TCGCATCAGG TGTGGGGCAG GCGGTATCGG GCAACTGGCT CGGAAGCGCA TCGCAGGGCG AGGGCGCGCC GGTGCCGGCG CAGATTGCCG ATCAGTTGCG AGGGCGGGAG TTCAGGAATT TTCGGGCGTT TCGGGAGGCG TTTTGGAAGG CGGTGGCCGA TGATTCTGAG CTAGTAAGTC AATTTAACAA TAGTAGTGCT TTTGAAATGA AAAATGGTCG AGCACCGTTC GTTCGAAAAA TTGATAGGGT GGGAGGGCAA GTGAAGTTTG AGCTCCATCA TTCCGTCTAT ATATCTAGAG GAGGGGAGGT TATGGATGTA GATAACGTTC GAGTAGTTAC TCCTAAACAG CACGGCGCGA TACATTCGGA GGGGGATTGA
|
Protein sequence | MSDIENYLGP HKQTGPGRYE LAPIPVKGVT PVRLGQGGFF SGSWGLNEGP HRGTGQGSGK LDPLTPFIWN DLMQEQQNAQ AYIDLEYAGV FSNIGAASNN EVERARQAAS AGLSAAQKVK ADQEITIQVI HSKLLEYRAH TEIAYSLYGH NPFFLMKDLS FKKIRDSLAL PVPDVSVAYA AIDRAYRSAM ELRRLSWVMA IIANQLPELA ARRSQVEAAT QTTRDAQQIL SAERLSVVNL ETNIRLHFLP GFLVERVAAA AGSTGGSLSQ TLTNYKIAAD NIRAVEQAAV RPYAIANPAI NAPLSKPELE ALKNLVDLQA TIDLGKRWQD YHASLLHSES ARHMAAAADA FAGLIARAQE AERLQEQIRI ARELEARHLQ EQARIAAEVE ARRVAEEQAR IAAEAEARRL AEEQARMVAE AIRNAHTFRA PSAASATGPL FMTSAGVVAV AEAAAASLQA AVRSAIAGLG SLAASVGAGA VVGVSALVYS SKLGNGELPD RYAFSTPLSD LAPDFAPDLH AIAAAGGTVD MPFRVSSKTD AYGQSEVFVV KTDGRNIPSA VRVVAASYDT ERNVYTATTF DVPPRTLTWT PIVNPGNSST TSPAGQPDVP AYTGATVVPV EGRLDSFPGV FEAGFDDYVL VFPQDSGLPP NYTMFRDRRE DPGVASGVGQ AVSGNWLGSA SQGEGAPVPA QIADQLRGRE FRNFRAFREA FWKAVADDSE LVSQFNNSSA FEMKNGRAPF VRKIDRVGGQ VKFELHHSVY ISRGGEVMDV DNVRVVTPKQ HGAIHSEGD
|
| |