| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_4482 |
|---|
| Symbol | |
|---|
| ID | 3717741 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 5054086 |
|---|
| End bp | 5055078 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | |
|---|
| Product | NAD-dependent epimerase/dehydratase |
|---|
| Protein accession | YP_350210 |
|---|
| Protein GI | 77460703 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.116288 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAATTC TGGTCACCGG CGCAAGCGGC TTCATTGGCG GACGCTTTGC GCGTTTCGCC
CTGGAGCAGG GCCTGGAGGT GCGGGTCAAC GGTCGCCGGG CCGAGGGTGT CGAGCATCTG
GTACGTCGCG GTGCCGAGTT CGTTCAAGGC GATCTGAGCG ATCCGGATCT GGTGCGTGCG
CTATGCAGCG ATGTCGAAGC CGTGGTGCAT TGCGCCGGCG CGGTCGGCTT GTGGGGCCGT
TATCAGGACT TCCATCAGGG CAACGTGCAA GTCACCGAAA ACGTGGTCGA GGCCTGCCTG
AAACAACGGG TTCGGCGGCT GGTGCATCTG TCGTCGCCCT CGATCTACTT TGACGGTCGC
GACCACCTCG GCCTGACCGA AGAGCAAGTG CCCAAGCGCT TCAAGCATCA CTATGCCGCG
ACCAAATACC TGGCCGAGCA AAAGGTCTTC GGCGCCCAGG AATTCGGCCT CGAAACCCTC
GCTCTGCGCC CGCGTTTCGT CACCGGCGCC GGCGACATGA GCATCTTCCC GCGCTTGCTG
AACATGCAGC GCAAAGGTCG TCTGGCAATT ATCGGCAACG GCCTGAACAA GGTCGATTTC
ACCAGCGTGC ACAACCTCAA CGAAGCATTG CTCAGCAGCC TGCTGGCCGA TGCCTCCGCG
TTGGGCAAAG CCTACAACAT CAGCAACGGC GCTCCGGTGC CGCTGTGGGA TGTGGTCAAT
TACGTGATGC GCAAGATGGA AGTCCCACAG GTCACCCAGT ACCGTTCCTA CGGTCTGGCC
TACAGCGTGG CGGCGCTCAA CGAAGGGGTG TGCAAGCTCT GGCCCGGGCG TCCCGAGCCG
ACCCTGTCGC GCCTGGGCAT GCAGGTGATG AACAAAAATT TCACCCTCGA CATCAGTCGC
GCCCGGCATT ATCTGGACTA CGATCCGAAA GTCAGTCTGT GGACGGCTCT CGATGAGTTC
TGCAGTTGGT GGAAAGCCCA GGACATTCGT TGA
|
|---|
| Protein sequence | MKILVTGASG FIGGRFARFA LEQGLEVRVN GRRAEGVEHL VRRGAEFVQG DLSDPDLVRA
LCSDVEAVVH CAGAVGLWGR YQDFHQGNVQ VTENVVEACL KQRVRRLVHL SSPSIYFDGR
DHLGLTEEQV PKRFKHHYAA TKYLAEQKVF GAQEFGLETL ALRPRFVTGA GDMSIFPRLL
NMQRKGRLAI IGNGLNKVDF TSVHNLNEAL LSSLLADASA LGKAYNISNG APVPLWDVVN
YVMRKMEVPQ VTQYRSYGLA YSVAALNEGV CKLWPGRPEP TLSRLGMQVM NKNFTLDISR
ARHYLDYDPK VSLWTALDEF CSWWKAQDIR
|
|---|
| |