| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_4286 |
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| Symbol | |
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| ID | 3713984 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas fluorescens Pf0-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007492 |
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| Strand | + |
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| Start bp | 4835766 |
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| End bp | 4843508 |
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| Gene Length | 7743 bp |
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| Protein Length | 2580 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | |
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| Product | leucine-rich repeat-containing protein |
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| Protein accession | YP_350014 |
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| Protein GI | 77460507 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATCTC CGATCAATCG GGCCAGCGCC ACGGCCGACA CCGACGACCG ACACAACCCG
CCCTCTCATT ATCAACCGCT CGTCAACGCC ATGCCCTCAT GGCTGGGCAA TGCCTCGGAC
AAAAGGCGCG AGGCACTGAA GAACAATCGC AAGACACTTC CCGACACCAT CAAGACTGCA
CCGCAGGCGG ATCACGACGA ATTGAGAGCC GCGATCGCCA ACCACATGTC CGCTCAGAAC
ACCGTGGATC AGAGGCTCGA ACGCGTGCAG GACGCCAGCG CGTTTGCAAC ACCGCTGCTT
GCGCAAGCGT TGAAGTCCCG GTTCGGCGTG GAAGTGGACG TCAAGGAAAC CTTCCTGCGC
CTCTACATAC CGGTGACCGT ATCCGGCTTT GCGATCAAAA CCGGCGCCCG GGTCTGGACC
GTATCGCTGG TAGAGGCGGC GCTGCACAAT TTCGAAGAGA AGGAAACACG GCAAGGGGCT
TACGAAAGTG GCTCGTCCTT TATTTCCAGA CCGTCTGCGA CAGGGCAGTT CGAGCCGCTG
CCGCAGGTCA ACGGCAAAAT CACTATCCCG GCCTTCACCA GCCTGTGCCG GGAGCTGGAC
ATCGGCGCCC GCTACAAAAC CTACCTTGAA GACAGCCTCG GTTTCACCAG TCCGGTCGCC
GCTGCGGTGT TATCCCGCGA TGTCAAGGAC AGTCAGAAAG CCGCACTGAG GGCCGCCCTC
CAACTGGCAC GGATGAACCA GGACATCGGA GAGTTATATT TTCGACTGAT CGGCGGCTTG
CTCGATGGTC TGGAAGGCAT GCGGATCGAC CGCCAACCGC TGCGCTGTCA CGACTTGACG
ATGATGTCGG CCACACTGAC CGGCATCGTG ATATTCACCC CGGATCTGGA ACAGGCCAGG
GCCTCGACCC GGGTGGTTGC TTACATACCC GATGATCCCG AGCACCCCAT CAAGGAATAC
GCCTCGCCCG TCGAAATGGA GAAGGAACTG ACCCGCCAAT TGCGCGCCCC CGACTATCAG
CATTTCTTCA GCCGTTTCGT ACTCCATGAA CAACGTGGTC ATTTCTTCAG CGAACTGAAC
CGACGACTGA GCAAGGTGAC ATGGCACAAG CCTGAGGCGG GAAGCCCGCT GCCTGCCTGG
CGAGACACCC CTGTAAACAA GCCGAAACTG CAACTTGCCG TCACGCCCAT CACCACAGAA
CTATGGGAAC ACCTCTACCA GGGCAAGCTG AACAAGATCC TCAATGACGC AGCGACTATC
GCCGTATCAA CGGCCACGAC GGACGCTAAC GCCCGCTGGG CCCTCTGGGA CTCATTCGTC
AACGTGGCGT CATCGATTCT CGAGATCGCC TCCTTCGTCC TGATGCCGTT CGTACCGTTT
CTCGGAGAAA TCATGATGGC CTACATGGCC TACCAATTTC TCGACGAAGC CTTCGAGTGG
ATTGTCGACT GGGCCGAAGG GCAGATTACA GAGGCCGCCG AGCATTTTTT CACCGCATTG
GAATCATTGA TTCAGCTGGG GGCCTTCGCC CTCGGTGGCG GGATTGCCCT GGCAGAACTT
CCAAAAATAC TGCCGGCAGA AGTCATGTCA TTCATTGACC GGTTCCAGCC CGTCAAACTG
CGCAATGGCA AAACCCTCTA CTGGAAACCG GATCTGAAAC CTTACGAGCG CCAGGTCAAG
CCACCCGAAG GGACCGGGCC CGACCGCCAG GGCCTGCATC ACTATCAGGG CGAAAGCCTG
CTGCCACTCG AGCAGACGCA TTACCTCGTC AGTCCGCATG AACATCCCGG CAAACTCTAC
ATCGAACACC CCGCACGGGC AGATGCCTAC CGTCCCATCG TGCGCCATAA CGGCGAAGGC
GCCTTTCATA CCGAGCTTGA ACGACCGCTT GAATGGGACG CCCCTACCGC ATTGCAACGG
ATCGGTCACA GCGTCGAGTC GTTCCCTGCG GTGCGACGTG AGCAGATCCT CAAGGTCAGC
GGTTATTCGC AAGACGCACT GCGCAAAATG CACGTCAACC AGGAGCGCTT GCCCCCCCTG
CTGGCTGACA GCATTCAGCG CTGCCGGATT GATCAGGACC TGCAGGACTT CATCGACCGG
ATGGCCAGCG ACCGCCCCGA GGATTATTCA GGTGCGGATC CGCTGCTCCA GCTCCGGCTT
ATCGCAGAGC AAACGCCCTG GCCCCAGCGC AAGACATTGC GTTTCATCAA CGCTCAAGGT
GAGATTGCAT GGCAATCCTC TGCCGACGAA CAGCTTCCTG TGACCGAGAT TCGGCAGGAC
AGCCTGTCCG ATGGCGACGT CCTCAAGACG CTGCTGCAAA CGCTCAGCGA GCCGGAAATC
AATACGCTGC TGGGAGAGGA TTTCTCAGAG ATGCACGCTA TCGAAGCGCG CACGCGCAAG
CTCAGAGCCA GACTGGCGCA GATCGCCCGA GAGCAGCGCA CTTCGCTTTT CGAGCAACGC
TACCAGGCGC TCCAACAGCG CGACGAGCCC TTGATCAGGC GTGCGGCCCT GCATGAGCCG
CAGCTGCCTG CCAGGGTGAC TGAAGAGTTG CTGAACACGG CCACCGGTTC GGAACTGGTG
ATGATCAGCA AAGGACAATG GCCCGAACGG CAACAGGCGC TGGCAGAACA TGCCAGGCAG
GAACTGCGCG TCACTCGCGC CTTCGAAGGG TTGTTGCTGG ATTCTGTGCG CAATCCTGAT
ACCGATACGC TGGCGCTGCA CAGCCTGCAA CGATTGCCAG GCTGGTCCGC AGACGTACGC
CTTGAAGTGC GCGGTCAAGA TCCCCAGGGA CAGCTGATCG ACAGCACCGG CCCGGTCGAT
GCCGCCATTC AGAAGGTGCT GGTGCTCAAA TCCGATGGGC TCTGGCAGCC GTACGACGAG
CAGGGACTGC AACTGCACGG CTCCACCGAT TTCTACACTG CCGTCCTGCA AGCCCTGCCG
GACGCGCAAA GAAACGCCTT GAACCTGCAG ATCGGCGAGG GGGAAAAACT CAGACAAGCC
ATCAGTGACA ATCCGCTGCC ACGTACCGAA CTGCGGCTGG CGATCATGCC CGACCCCGTG
CCGCCCCCCG TCATGGATAC CTTGCGGTTG CTGGGCACGG ACGGTTACTC ACGCAACCCG
CCACCGGCGC TGCGAGCACC TCGCACGCTG GACAACCGGA TCAGGCAGAT CTACCCGAGA
ATGCCTGAAG TCGAACGAAT CGCCATGGCG CAGCGCCTGG CCAACCATCC GAACGGCGCG
ATCGCCGAAC TGTCACGGCT TCAGCTGGAA TACGCGCAAC TCGACAGCGA TCTCAATCAA
TGGCTGTTCG ACCTACCGGA GATCAACCCG GCTGATGGCC TCCGTCGAAC GGATGACCAA
CAGATGGCCG CCATCCGTGA TCGCCAGACG TTCGCCAACG ACCTGCGTAG TTGCTGGCGC
AGAGAAGTGC ATGGCCCGCA TGGTTACCAG ATGCGTTTTT CACAGCCGAT CGTGGGTGAC
CTTCCTGCCC TGACGGCCGA CTTTTCCCAC GTCGACAATC TGGAACTGAT CGGCAGCGGC
GAGCCCGGTG CCCTTGACCA CTTCCTCGAA AGTTTTTCGG GACTTGTACG CATGGACCTG
CGCGACTTCG ACCTGCACAA TCTGCCGCCG CGCCTGACAA CGCTCGCAGG TCTGAAACAG
CTGACGCTGC AAAACTGTGG CGTCGTCCTG ACACCGGAAA ACCGATCGAT TCTGTCGAAC
CTCAACGGGC TGACCGCACT GGATCTGGAA GGCAATCCAC TGGGTGTGAC GTTCGACTTC
ACCTTCATGC CGAACCTGAC GCATCTGAAC CTTTCCAGTA CCGGCCTCTC CGAAATCCCC
AGCGGCGTCC TGGATCACCC GCGCCTGACC AGCGCATGGC TTACCGATAA CCAGATCACC
ACACTGCCCG ATGCCTTGTT CGAACAGCCG GCTGCTTCCA CCGCAGGGTA CGATTTTTTC
GGCAACCCGC TTTCTGCTGC GACCCGTGAA AACGTGAAGA TCTACTTCAA CCGGACCGGC
AGCGATCTGG GCGTTCGTCC CGAGCAAACG GATATAAACC GGATCAAGGC ACTGTTTCCC
GACCTGAATG ACCGTCAATC CAGCGAACTG ATTTACAGCC TGCCCGGCTC GCTGTTACAG
GGTCGGCTTC AACTGGATCG CTGGGAGAGC GAAATAACCC GGCTGACCAG CGAGCTGGCC
ACATGGGCGC GGGACACACC CAATCGTGAT CCGTCCACGG GTGAAATGCT GACCCCCAAC
GAACATTTCA ATCAGTTTTA TGAGCGAGAA GTTTTCGCCG GAAGAATTGA GCGGCTGTGG
CGTCACCGAT CGACGGCACA TCCGCTGACG AGAGCGGATG TGTTATCGGC GCAAGCCAAT
TTCATCGGTG ACATGCCGGA GCTGTCGGCG GATTTCAGCC ACATCACCGC ACTGTCGCTC
AACGGGAACA AACAAATACG TGTCACCTCA ACCTTTCTGC GCAGCTTTCC CCGGTTGAAA
CGCCTGATCC TGCATGACTT TGCACTTGAA CAACTGCCAC AGTCCCTGGC GGCCCTGCCC
GTGCTCGATA CCCTGGTTCT CAACAACTGC GGCGTGACCT TGACTGGCGA GCTGCAGCTT
GCACTGGCGG GGATGCGCGA GCTTGAATCA CTCGAACTGC CCAACAACCC GCTGGGCAGT
GCGCCCGACG CAGGCAGTCT GCCAGCGCTC ATGTATCTGG ACCTCTCTCG CACAGGCATC
AGCGATGTTC CTCCCGGATT GGCCGGCCAT CCGAGATTGA AAACGGCCAT TGTCAGTGAT
AACCGGATCA GCGAGTTGCC CGAGGCGCTC TTTGACCTGC CCGCCGAAGC CAGCGCAGGA
TTCGATTTCT CCGGCAATCC GTTGACCGCC GACACACTGG AACGGATCAA ACGTTACTCG
CGCGACACCG GCATGGATTT CGGCGTGATC GCCAAACAGG CTGACATCGA TGCCACCCAG
GCGCTGTTTC CCGACCTGGA CGGCGAAGAG GCCAGCGAGG TGTTTTACGG GTTACCCGGT
GACCTGGAAC ACGGACGCCG CCAGCTCAGG CACTGGAAAG CCGAGCTCGA GCAACTCACC
GCCGATCTGT CGCAATGGAA AATGGCAGTG CCCCACGAGC ATCCTTTCAG CCATCAACCC
CTCTCACCAC GGGAGTTCCT CGCCGAACAT TCGGCACGAA CAGCGTTTGC CGAACAGTTG
CAAACCCTGT GGCGCTCACG AATGCCGGAA AACCCCAGGC AGCGGGGCGA TTCACTGGTA
GCACGTGTGA CATTCATCGG CGAACTGCCC ACCCTGACGA CCGACTTCAG CCACATCCGC
GAAGTCTCAC TCACAGGGCA TGACGCTCTC GGCAACGTCG ACGGTTTCCT GCAACCCTTC
AACACCTTGC GCCACCTGGA ACTGCACGAT TTCAACCTGG GCCAGAACCC GCTGACGTCC
ATGCGCATGC CTTCACTGCA GCGCCTGGTT CTGGAGCATT GTGGATTGAC GCTGACCCCG
CAAAGCCGCA CATCCCTGTC GTCTCTTGAA GATCTTCGGT ATTTGAATCT GAGCCGAAAC
CCGCTGGGCG CCCACCCGCC CCTCGAAGCG CTGCCAGCCC TGGTGCAACT GCGCATGATC
GATACCGGGA TTTCGAGCCT GCCCGACGGT TTGCTCGGTC ATCCACGACT GCTCGTCGCC
ATGCTCGAAC GCAACCGGAT CCGCGATCTG CCCGACATCC TTTTCGATAT TTCCGCCCGC
CCACCCAAGC AACTCAGCCT CGCCGACAAC CCGTTGTCAT CCGCCACGCG CGAACGCATC
AAGCTCTGTT ACCAGCAGTT CAGGCAGCAC TTCGGCGTTT CAATGCCTCG AGAAGACCTC
GAGCGGATCC GTGAGCTGTT TCCATCCCTG AGCGATGATG ACGCCAATCG AGTGCTGTAC
CTGCTGCCGG GAACTCTCGA CTTCGGTCGA TTACAGATCG AGCGCTGGGA GACCGAACTG
CGGCAGCTTG AAGGCGACCT CGAAAAATGG GTGACCGACG TCCCTGATCG TTATCCGGCA
AGCGGCATCG AGCTGACCGC CAGTGATCGA TCCGCAGAGC ATGCCAGTCG CAGGATGTTC
CGACAGGAGA TCGAATCGTT CTGGCGCGAA AGGTCTCGCG AACACCCCGA GAAGCGAAGC
ACGGTGCTCA ACCTGAATCC GGCCTTCATC GGTGACCTGC CGGACTTGAG TGCCGACTTT
TCTCATGTGA CAACGCTATC GATCACCGGC AATGCTCAGC TACGGGCAGG CACAGGCTTC
CTGCGAGGGT TCACCGGCCT CGACTCGCTC GAATTGCGTG ATCTGGCATT GACCGAAGTG
CCACCCGCAC TGACCGCAAT GCCGGATCTT CAGCAACTGG TGCTGAGCAA CTGCGGGGTC
GTACTGGATG ACAAGGGCAG CGCCACGCTG GCGTCACTCA AACAACTGGT CAGACTCGAT
CTTTACAGCA ATCCGCTGGG CCGGCTGCCG GATATCCGCG GCCTGCCGGA ACTGGAATTT
CTCGATTTGT CGAACACCGG GATTACCCGG CTGCCATCGA GTTTGCTGGA TCCTCCCTGG
CTGGAAACCG CCATCCTCAG CGGCAATCGC GTGACCGAAC TGCCCGCCGA GCTCTTCGAT
TTGCCTGCCT CCGCCAGCAA CGGCATTGAC CTGGGCGACA ATCCGCTGGA CGCGGCCACC
CGCGAGCGCA TCAAGGACTA CTTCCGCCGA ACCGGGGAAG ACCTTGGCGT GCTGGCCGAG
CCGTCGGACA TCGCACGCGT CCAGACGCTC TACCCGGCCC TGAGCGATAA ACAGGCCAGT
AATTTCATCT ATCACCTCGA AGGCACACTG GCCGATGGCC GGATCGAGCT GGCACGCCGG
GAAGCCGAAC TCGAGCAATT GCTGGGTGAT CTTGCCGCCT GGGAAAACGA CATACCCGAT
CATCCGGTGA CCGGGCTGCC ACTCCCCCCG GACCAGCGCC TGATGCAAGA GCAAATCAGA
ACGGCATTGC GAGAAGCATT GCTGACTTGC TGGCGCAAAA CCCCGGTCGA AGGAGCAGAC
GCCAGTGACC ACCAGTTTGC GTTCAGGCTG CCGATCATGG GGGAGTTGCC AACACTGACC
GCCGACTTCG GCCACGTTTC GGATCTCTAT CTGGTCAGCA CCAGTGATCA CTCGCCGCGG
ATCGGTCGAT TCCTCGAGGC CTTTACCCAC CTTGAAAGCG TCGATATTCA AGGTTACGAC
CTGCCCTCCA TCCCCGAAGC CGTGTTCCGG ATGAAGCGAC TCACCACCTT GAGCCTGCCA
ACCTGCAATC TCACGTTATC GCCGCAGGAC GTGGCCGGGC TGGCGAGTCT GGACCAACTT
GATCTGCTGC ATCTGCACAA TAACCCGCTC GGATTGACAC CTGACCTCAG CAATTTGCAG
AACCTCACCG ACCTGGACCT GAGCACCACC GGCATCAGGG AAATTCCCAA GGGTGTACTG
GAGAATCTCA ACTGGATGGA AGTGGATCTG TCGGGCAATG AAATCACTGA AATGCCCGAT
GCACTCATGG AGGTGCCTGC CCACGTCGGC GATCGCTACG ACCTGTACGG CAATCCCTTC
TCCGCCCAGG CCATGCAGCG AATTCGGGCT TACTACCAGG AAACGGGGAT GACCCTGAAC
GTTGACGACG TAATGGAACA TCCACAGGTG CAAACTCGCC CCAGTGCCGA AATCGAAGAT
TGA
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| Protein sequence | MQSPINRASA TADTDDRHNP PSHYQPLVNA MPSWLGNASD KRREALKNNR KTLPDTIKTA
PQADHDELRA AIANHMSAQN TVDQRLERVQ DASAFATPLL AQALKSRFGV EVDVKETFLR
LYIPVTVSGF AIKTGARVWT VSLVEAALHN FEEKETRQGA YESGSSFISR PSATGQFEPL
PQVNGKITIP AFTSLCRELD IGARYKTYLE DSLGFTSPVA AAVLSRDVKD SQKAALRAAL
QLARMNQDIG ELYFRLIGGL LDGLEGMRID RQPLRCHDLT MMSATLTGIV IFTPDLEQAR
ASTRVVAYIP DDPEHPIKEY ASPVEMEKEL TRQLRAPDYQ HFFSRFVLHE QRGHFFSELN
RRLSKVTWHK PEAGSPLPAW RDTPVNKPKL QLAVTPITTE LWEHLYQGKL NKILNDAATI
AVSTATTDAN ARWALWDSFV NVASSILEIA SFVLMPFVPF LGEIMMAYMA YQFLDEAFEW
IVDWAEGQIT EAAEHFFTAL ESLIQLGAFA LGGGIALAEL PKILPAEVMS FIDRFQPVKL
RNGKTLYWKP DLKPYERQVK PPEGTGPDRQ GLHHYQGESL LPLEQTHYLV SPHEHPGKLY
IEHPARADAY RPIVRHNGEG AFHTELERPL EWDAPTALQR IGHSVESFPA VRREQILKVS
GYSQDALRKM HVNQERLPPL LADSIQRCRI DQDLQDFIDR MASDRPEDYS GADPLLQLRL
IAEQTPWPQR KTLRFINAQG EIAWQSSADE QLPVTEIRQD SLSDGDVLKT LLQTLSEPEI
NTLLGEDFSE MHAIEARTRK LRARLAQIAR EQRTSLFEQR YQALQQRDEP LIRRAALHEP
QLPARVTEEL LNTATGSELV MISKGQWPER QQALAEHARQ ELRVTRAFEG LLLDSVRNPD
TDTLALHSLQ RLPGWSADVR LEVRGQDPQG QLIDSTGPVD AAIQKVLVLK SDGLWQPYDE
QGLQLHGSTD FYTAVLQALP DAQRNALNLQ IGEGEKLRQA ISDNPLPRTE LRLAIMPDPV
PPPVMDTLRL LGTDGYSRNP PPALRAPRTL DNRIRQIYPR MPEVERIAMA QRLANHPNGA
IAELSRLQLE YAQLDSDLNQ WLFDLPEINP ADGLRRTDDQ QMAAIRDRQT FANDLRSCWR
REVHGPHGYQ MRFSQPIVGD LPALTADFSH VDNLELIGSG EPGALDHFLE SFSGLVRMDL
RDFDLHNLPP RLTTLAGLKQ LTLQNCGVVL TPENRSILSN LNGLTALDLE GNPLGVTFDF
TFMPNLTHLN LSSTGLSEIP SGVLDHPRLT SAWLTDNQIT TLPDALFEQP AASTAGYDFF
GNPLSAATRE NVKIYFNRTG SDLGVRPEQT DINRIKALFP DLNDRQSSEL IYSLPGSLLQ
GRLQLDRWES EITRLTSELA TWARDTPNRD PSTGEMLTPN EHFNQFYERE VFAGRIERLW
RHRSTAHPLT RADVLSAQAN FIGDMPELSA DFSHITALSL NGNKQIRVTS TFLRSFPRLK
RLILHDFALE QLPQSLAALP VLDTLVLNNC GVTLTGELQL ALAGMRELES LELPNNPLGS
APDAGSLPAL MYLDLSRTGI SDVPPGLAGH PRLKTAIVSD NRISELPEAL FDLPAEASAG
FDFSGNPLTA DTLERIKRYS RDTGMDFGVI AKQADIDATQ ALFPDLDGEE ASEVFYGLPG
DLEHGRRQLR HWKAELEQLT ADLSQWKMAV PHEHPFSHQP LSPREFLAEH SARTAFAEQL
QTLWRSRMPE NPRQRGDSLV ARVTFIGELP TLTTDFSHIR EVSLTGHDAL GNVDGFLQPF
NTLRHLELHD FNLGQNPLTS MRMPSLQRLV LEHCGLTLTP QSRTSLSSLE DLRYLNLSRN
PLGAHPPLEA LPALVQLRMI DTGISSLPDG LLGHPRLLVA MLERNRIRDL PDILFDISAR
PPKQLSLADN PLSSATRERI KLCYQQFRQH FGVSMPREDL ERIRELFPSL SDDDANRVLY
LLPGTLDFGR LQIERWETEL RQLEGDLEKW VTDVPDRYPA SGIELTASDR SAEHASRRMF
RQEIESFWRE RSREHPEKRS TVLNLNPAFI GDLPDLSADF SHVTTLSITG NAQLRAGTGF
LRGFTGLDSL ELRDLALTEV PPALTAMPDL QQLVLSNCGV VLDDKGSATL ASLKQLVRLD
LYSNPLGRLP DIRGLPELEF LDLSNTGITR LPSSLLDPPW LETAILSGNR VTELPAELFD
LPASASNGID LGDNPLDAAT RERIKDYFRR TGEDLGVLAE PSDIARVQTL YPALSDKQAS
NFIYHLEGTL ADGRIELARR EAELEQLLGD LAAWENDIPD HPVTGLPLPP DQRLMQEQIR
TALREALLTC WRKTPVEGAD ASDHQFAFRL PIMGELPTLT ADFGHVSDLY LVSTSDHSPR
IGRFLEAFTH LESVDIQGYD LPSIPEAVFR MKRLTTLSLP TCNLTLSPQD VAGLASLDQL
DLLHLHNNPL GLTPDLSNLQ NLTDLDLSTT GIREIPKGVL ENLNWMEVDL SGNEITEMPD
ALMEVPAHVG DRYDLYGNPF SAQAMQRIRA YYQETGMTLN VDDVMEHPQV QTRPSAEIED
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