| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_4099 |
|---|
| Symbol | |
|---|
| ID | 3712403 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | - |
|---|
| Start bp | 4636886 |
|---|
| End bp | 4641721 |
|---|
| Gene Length | 4836 bp |
|---|
| Protein Length | 1611 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | |
|---|
| Product | leucine-rich repeat-containing protein |
|---|
| Protein accession | YP_349827 |
|---|
| Protein GI | 77460320 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACTC CACCGCTATC GGGGACACCG GCCACCCTCA CGGAAGAACA GACACTGAGC
ATTTTGCTGG AGGCCACCGG CGATCTGGAC ACGGCCCAGG CCTTGCAGAA AAACCTGCCT
CCCGCGCTGC TCAAAACCGG TGCCGACACA CTGGCCGCGC TGGATAAGGC TGCGCGTGAT
CTGCAGGCCA TTCAGTGGAA AGTCGAGACG CATCTTGACC GGCTGCAACC GCTGAACAGT
TTTTGCATTG ATGTATTGAA CCGCGCGCTG AGTGCCCGAT GGCCCGCAGT GTTCAATGTC
GAGAAAGATC ATCTGCAATT GCCCGGCAAT TACTGTGGAT GCGAGCCCGT GGTCCCGCCG
GGGGGCGGTC CGGCGATCAT TCCGTTCGCC ACGCCCACGC TGCTCGAGGC CGCGATGCAG
AACTTCACGG AGGACGAGGC GCAGCCCGAT TATTTCCCCG AGGGCAGTGT GATACGGATC
TCCAGCGCGC CTGCCGGGGT TCCGGGCCTG ACGCCCACAT CGTTCGCCGC CTTTTGTCGA
GAGCTGAACC TGGGGCAGCG GTATCAGCAA CACTTCCTGC AGGTGTTCGG TGTCAAGGAA
GTGGATGGAA ACCTGGCGGC CACCGGTCCC GTGGTTCTCG ACATCACCGC AATGAAAAAA
CAACTGCTGC AACTGGACCT GCATCTGGCG ATGTTGAGGG AACACGTCTC TCGGGAGGGG
GGGCAGACGA TACAGCGCTT GATTGATGCC GGTGGCGTCG CCACTGCCAG AAGCCTCCAG
TTCAAGGGGC GTGCGCTGAT CATGCAAGGG ATTGAATTGC TCGGCAGTTG TATCTGGGGT
GTGGTGGTGT TCTCTGAGTC TTCGGTCGAG CTGGACCCGG AACAATGGTG CCTGGTGTAC
ATGCCGGGAG AGCCGGATCA ACCCCTTTAC GAGTACACCC GTTTCACGGC GTTCATGGCG
TATCTTGAGT TCAGGCTGAG GGTGGGCAGC TACAGAAGCT ATTTCACGCA TTGCATCGGC
GAAGGCGACA GGCTCGACTT TTTCAAGACC TTCGCGGATA ACGGCAGCCT GGGGCACGTC
AGGCAATTGG AGATGCCTGG TCCGCTGTTC GAGTTCATGC TCAAGAGTCA TGTCGGCAAG
CTGCAACTCG ATGCCCGTGT GCTCGCTGTA CCGACTGAAG ATGTCGATGA GGAGGCGCGC
AGGACGCGAC TGCTGCATTA CCTGGACGCC GGCATGACGG TGGCTAACGT AGCGGGTTTT
GTCGTACCGG TGCTGGGAGA GTTGATGATG GGCGTTGCCA TCGGGCAGAT GCTCGCCCAG
GTATATGAAG GCGTCGATGA CTGGAGCCGG GGAGATCGTC AGGAAGCGTT TTCACACCTG
CTGAGCGTCG CCGAGAACCT TGTCCTGATG GCCGTCGTGG GGGCCGGCAT CAAAGGCTTG
AAATCCCTGG CGATCAGAAC GGTTCGAAAA CATCCTGATT TCTTCCAGCC ATTCACTGCC
ATTCTCGACG GGAAGGGGCA GTCACGGTTG TGGAAGCCGG ACCTGCAAGC ATATGAACAA
TCCTTACCGG TGGGGGCTGC CCCCGATTCT GAAGTCATGG ACTTGTACCG GGGCGACGAC
AGGTTTTTTG CCCGTGTCGA CCAGCGTTTC TATGAGGTGG TGCATGATCC GGCTTCCGAT
ACCTGGAGTA TCCGGCATCC TGTCCGTCCC GATGCTTACG CTCCGCCACT CAAGCCCCAT
CGACATGGAG GCTGGCGCCA TGCCTGGGAG GAAAGCGAGC AGTGGAGCGG TGCCTACACC
CTCAGGCGCA TCGACCCGAG CCTGGGCAGG TTCGAGGACA GTCGACTGGA GATGATCCGG
CGGTTGACCG ACACTCGATT CGATGAGTTG CACCGTCTGA GTGACGACAA TCTGTCTTGG
CCCCCGCGTT TGCGCGACAT GATCGAGCGC TTTGGCATCG AACGCAGATT GCGTGATTTC
GTTTCCGCGA TGGAACGGGG CGAGGCAACC GATGCCCGTC ATGTTCAGGA GCAATTGCAC
GCGTTGCCCG AACTCGCCAA CTGGCCGACT GATCGCTACA TCAAGGTCGT GGACGAAAAA
GGCCGTCTCA CCGCGACCTA TCCTCCCGTG TCAATTGACG ATGACACTCT GAGCATTGTC
GTGAGCCATG AGCAACTGGA AAAAGGCGAG TTGCTGCAAA CCGTTCTGGA CGGCACCTAC
CCCAGGGAAG CCGAAGCATT GGTAGGTGGG AACATTGCCC CGGCTGATGC AAGCGTCAAG
CTGGCGCAAG TGATCGGGGC GGCGGTCAAG GCTGATCGTC GCTCGGTTTT CGACCACCTG
TACCGGCAGT TCGATCGTGG TCTCGCCGGT GAGTCGGTCA AGCTGCACAG CGCTTTTCCC
GGTCTGCCGG TACGGTATGC GCGAGAATTG CTCAGGCGCA CGCCGACTGT CGAGCGGATG
AACCTGCGCA GCACCGGGCG GGTGCCCATG GGCCTGGCAC AGAGGGCCCG TCAGGCCTTG
AGCGATGTCC GTGTGGATCG GGCGCTGGCC GGCTTTTACC TGGCGGACAT CGCCGGTGCC
GATACCAGGA AACTGGCGCT GCGCCTGTTA CCCCGGCTCA CTGGCTGGAA TACCGAGTTC
TACCTTGAAC TGCGGGCCAA CACACTCAAC GGTGAGGTAC TGGAGACGTC AGGCGAGAAA
CCGCTTTTGA CTTCGAATTC ATGCACGCTG GTTCGACTCG ACAATGGTTA CGAAGTGTTC
GGCAGCGACA GGAAGTCGCT CGGCAAAGTG GTGCCCGGCC CGGAAGACGT CTATCACGCG
ATCCTCAAAG GCCTTCCAAT GCGGCAGCGC AAGGCCATCG GATTTGCGCA GCCGAAGCCG
GAAGATGGCT GGCGCCTGCG CCATAAACTG TTGGCAAGCG CTCTGGATGA GCGTGAAGGC
TGTGCCCGGG TGTTGGCAGG CGGTCGGATG CCACCGGCCA TTTCCGAGCC TGCGTGTACG
CTCGCCGATT CGCCTGTCGG GCCGGCAAGG CATTCGCAAC GTTTGCTGCG CAAAGTGAAG
AAGCTCTATC CCTTGATGAC TGACGTACAA GCCAATGAGT TTCTTGACCA GGCGGGCAGC
GACCCAGTGA CCAGGGCGAT CCGGGTTCGG CAGTTGCAGG AGGATCTGCG CCGGCTGCAG
GAAGTTCTGG ACATCTGGAG CGAGGATGAA ACGGCCATGA AAGCCTTGGG CGGCGATCTG
AATGAGGTAC ACGAGTGTCG ACAGGTCGTG GCGTTCGAAA TCGAAGACTG TTTTCGACGT
CTGGTTTTCC TGCCCGATGA CTTTCAGCGT CCCGTCTACG GTCTGAAACT CGACGGCATG
CAATTCGGCA AGTTTCCGAC CTTGCCGACC GGCCTGAATT TCGATCATGT CAGGCAACTG
TCGCTGCGGG ACATGCAGCT GGACAACGAC GTCGCTTACT TTCTCAAGGC CTTCAGGCAA
GTCGAATCAC TGGAGCTGGA CCGTAATCAA CTGACCCTGT TGCCCGAGGT CATTTCGCAT
ATGCCCAACC TTAAACGACT GAGCCTCGCC AACAACAGGA TTCAATTGAC CGAGCATTCG
CTGGTGAAAC TGGCCAGGTT GTACTCCCTG CAAAGCCTGA ATCTGAGTGG CAATCCCCTG
GGGGCGACAG TGGATGTCAG TCGTCTGTTC GAGTTGACTC ACCTCTCCTT GCGCAATACC
CGCACCACAG AACTGCCCGA AGGCCTGCAG TTTCTACCCA ACCTGGATTG GGTGGACCTG
CGTGACAATG AAATACGCGA TCTGCCTGCC TGGCTTTTTG AAACGCCCCG ACGTTTCAGT
GAAACCATCA ATCTGCGTCA CAACCCGATT TCCGCTGCCA GCAGAATTCA CCTCGATGAC
TACCGGAAGA CCTTCGGAGT CGGCATGGGC TATCTGGATA ACGATATCGC GCGACTGGAC
GAAAACCAGG CCCGCTCGAT CTGGCTGACT GAAACGGGAG GGGAGGAGGG CTCCCGGCAT
CTGCAGACGT GGAACGCGAT CAAGGATGAT ACGAGGGCCG AAGGACTGTT CAGTCTGCTG
GCGGAACTGG GCAATTCCGC CGAATCCGCC AGCGTACGCG AGGATATGAC CCGGCGGGTC
TGGACGGTGC TGGACGCGAC ACAGGCCGAT ACCGAACTGA GGGAGCAGAT TTTCGATCTG
GCGGCCAATC CGATCAATTG CACGGACAAT GCGGCGTTGA ACTTCAGTCA TCTGGAAGTG
GCGGTGCAAG TGCACCGTGT GACCCGTGCC TCAAGGGGGC AACGGTCTTC TGCGGCGGCG
CTCGTGAAGC TGGCGCGAGG GTTGTTCCGG CTTGAGCAGA TTGACCGGAT CGCAGCCGAA
CATACGCAGG CACATGGGGC CGCTGATCCT CTGGAAGTGA CGCTGGCTTA CCGCTCCGGT
CTGGCGCAGG CACTTGAACT GCCCGGGCAA CCTTCGCACA TGCGTTATGC CTCGCTTGCG
CAGGTGACAG GAGCGGATCT GGTGGCGGCG ATCAATCGAA TCCAGACCGC GGAGCTGTCT
TCCGAGTGGT TGGCGTTTCT GGTTCGCCAG CCCTTCTGGA GTGAATACGT GAAAAGCAGT
TTTACCCGGC AGTTCGACGA TGCGCGCGCA CCTCACCAAC AGGAAGCACT GGCGTTATTC
GAGAAGGCTG AAACACTCAG CTCGGCCGAC TACCTGAGTG AGATGCACCT GTGTGCCGCC
CGACAGGAGC GAACGGAAAG CGCCTTGCTC GAGCAACTGA CCGACCAGGT GTTGCGGCTG
CTGGAGGGCA ACCTCTGCGT GTTGCCCGCT GGTTGA
|
|---|
| Protein sequence | MTTPPLSGTP ATLTEEQTLS ILLEATGDLD TAQALQKNLP PALLKTGADT LAALDKAARD
LQAIQWKVET HLDRLQPLNS FCIDVLNRAL SARWPAVFNV EKDHLQLPGN YCGCEPVVPP
GGGPAIIPFA TPTLLEAAMQ NFTEDEAQPD YFPEGSVIRI SSAPAGVPGL TPTSFAAFCR
ELNLGQRYQQ HFLQVFGVKE VDGNLAATGP VVLDITAMKK QLLQLDLHLA MLREHVSREG
GQTIQRLIDA GGVATARSLQ FKGRALIMQG IELLGSCIWG VVVFSESSVE LDPEQWCLVY
MPGEPDQPLY EYTRFTAFMA YLEFRLRVGS YRSYFTHCIG EGDRLDFFKT FADNGSLGHV
RQLEMPGPLF EFMLKSHVGK LQLDARVLAV PTEDVDEEAR RTRLLHYLDA GMTVANVAGF
VVPVLGELMM GVAIGQMLAQ VYEGVDDWSR GDRQEAFSHL LSVAENLVLM AVVGAGIKGL
KSLAIRTVRK HPDFFQPFTA ILDGKGQSRL WKPDLQAYEQ SLPVGAAPDS EVMDLYRGDD
RFFARVDQRF YEVVHDPASD TWSIRHPVRP DAYAPPLKPH RHGGWRHAWE ESEQWSGAYT
LRRIDPSLGR FEDSRLEMIR RLTDTRFDEL HRLSDDNLSW PPRLRDMIER FGIERRLRDF
VSAMERGEAT DARHVQEQLH ALPELANWPT DRYIKVVDEK GRLTATYPPV SIDDDTLSIV
VSHEQLEKGE LLQTVLDGTY PREAEALVGG NIAPADASVK LAQVIGAAVK ADRRSVFDHL
YRQFDRGLAG ESVKLHSAFP GLPVRYAREL LRRTPTVERM NLRSTGRVPM GLAQRARQAL
SDVRVDRALA GFYLADIAGA DTRKLALRLL PRLTGWNTEF YLELRANTLN GEVLETSGEK
PLLTSNSCTL VRLDNGYEVF GSDRKSLGKV VPGPEDVYHA ILKGLPMRQR KAIGFAQPKP
EDGWRLRHKL LASALDEREG CARVLAGGRM PPAISEPACT LADSPVGPAR HSQRLLRKVK
KLYPLMTDVQ ANEFLDQAGS DPVTRAIRVR QLQEDLRRLQ EVLDIWSEDE TAMKALGGDL
NEVHECRQVV AFEIEDCFRR LVFLPDDFQR PVYGLKLDGM QFGKFPTLPT GLNFDHVRQL
SLRDMQLDND VAYFLKAFRQ VESLELDRNQ LTLLPEVISH MPNLKRLSLA NNRIQLTEHS
LVKLARLYSL QSLNLSGNPL GATVDVSRLF ELTHLSLRNT RTTELPEGLQ FLPNLDWVDL
RDNEIRDLPA WLFETPRRFS ETINLRHNPI SAASRIHLDD YRKTFGVGMG YLDNDIARLD
ENQARSIWLT ETGGEEGSRH LQTWNAIKDD TRAEGLFSLL AELGNSAESA SVREDMTRRV
WTVLDATQAD TELREQIFDL AANPINCTDN AALNFSHLEV AVQVHRVTRA SRGQRSSAAA
LVKLARGLFR LEQIDRIAAE HTQAHGAADP LEVTLAYRSG LAQALELPGQ PSHMRYASLA
QVTGADLVAA INRIQTAELS SEWLAFLVRQ PFWSEYVKSS FTRQFDDARA PHQQEALALF
EKAETLSSAD YLSEMHLCAA RQERTESALL EQLTDQVLRL LEGNLCVLPA G
|
|---|
| |