| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_3741 |
|---|
| Symbol | |
|---|
| ID | 3714653 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 4228451 |
|---|
| End bp | 4230322 |
|---|
| Gene Length | 1872 bp |
|---|
| Protein Length | 623 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | |
|---|
| Product | extracellular solute-binding protein |
|---|
| Protein accession | YP_349470 |
|---|
| Protein GI | 77459963 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.715564 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACATTCA TGCGCAACAT GGCCGGCCTG CTGCTCGGCA GCGCGCTGCT GTGCAACGCG
GCAGCTGCGC TGGCCGGCGG CAGCTACGCG ATGACGGTGT ACGGCGAGGC GCCGAAATAC
CCCGCCGGTT TCCAGCACTT CGATTTCGTC AATCCCGACG CCCCCAAGGG TGGCTCGCTC
AGCCGCGCTT CGATGGAGAT CGGTCAGTAC AACTACATCA CCCCGTATGC CGATCAGGGC
ATTTCCGTGG TGCAGGTCAA CGACTGGGTG TATTCGCCGC TGGCGTTCCG CTCGCTGGAC
GAGCCCTACA CCGTCTACGG TCTGGTGGCG CAAACCATGG AGCGCGATCC CGACGGTCTG
TGGGTGCGTT TCAACCTGAA TCCCGAGGCG CGTTTCGCCG ATGGCACGCC GATCACCGCC
GAGGACGTGC GCTACACCTT CGAACTGTTG ATGACCAAGG GCAGCCTGAG TTATCGCCAG
CAATACGCCG ACGTGCAGGA CGTGCTGATC GAAGGCCCGC GGCAGATTCG CTTCACCTTC
AAGAACAACC TCAACCGCAC CCTGGCGCTG GATCTGGCGT CGCTGCGACC GGTGCCCGAG
CACTGGTGGA AAACCCGCGA CTTCGCCAAC GGCGGCGGCT TCGAGCCTCC GCTGGGCAGC
GGCCCGTACC GGGTGAGCAA GGTGGACGCA GGACGCAGCA TCAGTTTTCA GAGAGATCCC
CACTGGTGGG GCAAAGACCT GCCGGTCAGT CGCGGGATGT ACAACTTCGA CAGCCTGACC
GTGAATTTCT ACGGCGACAC CGATGTCGCC CGACAATTGC TGCAGGCCGG CGCGTTCGAC
TACAACCGCG AGTTTTCCTC GTCCGGCTAC GTGGTCGGCT ACGACAGCCC GGCCCTGCGC
GACGGTCGCC TGCAACAGGC AATTCTCGCT CCGGACAAAC CGACCTGCGC CCAGGGTTTC
GTGTTCAACC TGCAGAATCC GCTGTTCAAG GATCGCCGCG TGCGTCAGGC GCTGAGCCTG
CTGTGGGATT TCGAGTGGAC CAACAAGCAG ATGATGCGCG GCTTCTACGT ACGCCAGAAC
AGCTACTGGC CGAAGAGTGA AATGGCCGCC ACCGCACTGC CCGACGCCGG GGAGCTGGCG
ATCCTCGAAC CGCTGCGCGG ACAGATTCCG GACGAGGTTT TCAGCCGGGT CTATCAGGCG
CCGAAAACCG ATGGCAGCGG CTACATTCGC GACAAGCAGT TGCAGGCCCT GAAGCTGTTG
GCCGAGGCCG GATGGACGCC GAAAAACAAC CGACTGGTGA ACGCCGCCGG CGAGCCCTTC
GAATTCACCT TCCTCGACGG CCAGGGCGGC TTCGACCGCA TGCTGCTGCC GTACAAACGC
ACCCTGGCGC AGATCGGCAT CACCCTGAAT CTGCGACGTA TCGATTCGGC GCAATACATC
AACCGGCTCA ACGCCCGGGA CTACGACATG ATCGTCACCA GTTTCCCGCG CAGCGGCGAT
CCGATCGTCT CGCCGGGCCG CGAGTTGTAC AGCCTGTATG CCTCACAGAG CGCCACACAA
GTCGGCAGCT CCAATTCGAT GGTGCTGGCC GATCCTGCGG TTGACCGGCT GATCGACGGC
CTGGTCCAGG CCAATACCCG CGACGCCATG GTGCGTTACG CCCGCGCCCT CGACCGGGTG
CTGCAATGGG GTGACTACAT GATTCCCAAC TACTACTCCA AAGGCACGCC GACGGTGTTT
CAGAACCGCT TCGGCAGGCC GCCGGTGCAG CCGATCTACA GCGAAGGCCT CGATACCTGG
TGGGAGGTCT CGGCCAAGCC GCTGACCAAC CAGCAGATGA GCGCCCTGCG CCAGCTCGCG
GGGGGCCAGT GA
|
|---|
| Protein sequence | MTFMRNMAGL LLGSALLCNA AAALAGGSYA MTVYGEAPKY PAGFQHFDFV NPDAPKGGSL
SRASMEIGQY NYITPYADQG ISVVQVNDWV YSPLAFRSLD EPYTVYGLVA QTMERDPDGL
WVRFNLNPEA RFADGTPITA EDVRYTFELL MTKGSLSYRQ QYADVQDVLI EGPRQIRFTF
KNNLNRTLAL DLASLRPVPE HWWKTRDFAN GGGFEPPLGS GPYRVSKVDA GRSISFQRDP
HWWGKDLPVS RGMYNFDSLT VNFYGDTDVA RQLLQAGAFD YNREFSSSGY VVGYDSPALR
DGRLQQAILA PDKPTCAQGF VFNLQNPLFK DRRVRQALSL LWDFEWTNKQ MMRGFYVRQN
SYWPKSEMAA TALPDAGELA ILEPLRGQIP DEVFSRVYQA PKTDGSGYIR DKQLQALKLL
AEAGWTPKNN RLVNAAGEPF EFTFLDGQGG FDRMLLPYKR TLAQIGITLN LRRIDSAQYI
NRLNARDYDM IVTSFPRSGD PIVSPGRELY SLYASQSATQ VGSSNSMVLA DPAVDRLIDG
LVQANTRDAM VRYARALDRV LQWGDYMIPN YYSKGTPTVF QNRFGRPPVQ PIYSEGLDTW
WEVSAKPLTN QQMSALRQLA GGQ
|
|---|
| |