| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_3108 |
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| Symbol | |
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| ID | 3712795 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas fluorescens Pf0-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007492 |
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| Strand | - |
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| Start bp | 3563999 |
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| End bp | 3568780 |
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| Gene Length | 4782 bp |
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| Protein Length | 1593 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | |
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| Product | leucine-rich repeat-containing protein |
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| Protein accession | YP_348837 |
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| Protein GI | 77459330 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCACCGA TTCCCGCCGC TGATATGAGA CCCGCGGCCT CACAGAGCAT CCACGGTCCG
TTTCTTGAAC AGGCCATTCC CGATTGGCTG ACGGACGCCA CGGCGCAGCG ACGTGCGGAG
CTGGGCAGCG CCAACGCGGC ACTGACGCCC GGTTATCGCC AGGCCACCGC GCAGCAGCGT
CGTGCGTTGA ACGACGCCGT TGTCGCCAGT TTCGTCGCCC AGTCCCGGCT GGACCGACAA
CTGTCAACCC TGCAAAACAT CGACACCTTT GCCAGGCCTT TGCTGACCAA GGCACTGCAG
GAGCAATTTG GCGTGGAGAT AGATGTCGAT GTGATTTATC TGTGCCTGAA CAAACCGGTT
CAAATGGGGA TCCTTTCGAT AGAAGTGGGT GTGTTCGAGT TCATCAAACT GCCGCTGCTG
CAGGCGGCGC TGCATAACTT TGCAGCCTCG GAATGTGAGC CTGAGGCATT CCACGATTCT
TCCGGTTTCT TGATCGAATG GTGGACATCC GGTGTGCTCC TTCCCCTGCA AACCACGTTG
ACCGTTCCCG GGTTCATCAC GCTATGCCGT TCGCTGGACA TCGGCGCCAA GTATCAGGCT
TACCTCAGGG GCTATCTCCA CGCCGAAGAG GTGCAAGCGA CCCTGCGGGA CAATTTCATC
GGCGCCGCCA AGGCTGATCT GCGCGCTGCC GCCGAGCAGG CGCTGCTGTG CAACGACATC
GAGCCTGCCG ACTACCCGAT GATCCTGTCG GTCATCGATG GCAACCGGCA TCCTCGCCTG
GGCAACAAGA GCGTCTGGTT TCACGAACTG AGCCTGATGA AGCATCGTAT GACTGGATGT
GTCTGTTTCT CGATCAGCGA GAATGATCGC TATACAGACG ATTTGCTGCT CTATATCCCC
CATGATCCCC GGCACCCGTT GAAGCGTTAT ACGCGCAAGC AACTGTGGGA CATGTTCAGG
AAGCGCTTCA GCGAACGCGA CAGCGGCTCG TCGGCAGAGG TTGTGCCGAC GGCGTATCAG
CGGTTTTTCA GCCGTTTCGT GGCTTATGCC GATCGCGCGG ACTATTTCAG TCAGTTCACT
CGCGATGCCT CGGACGCATC GGCCGCCGGG CGTGTTGTTC TCAAGCTCCT TACAATGCTC
AATCCCTTCA CCGGCTTCAC ATCCGTCCAT GAATGGCCCC CCCTGCGCCA GCAACCGCTC
CCGGAGGACG ACCCTTATCT GGCCCCGGCA GTCATTCCCC GCGAGGGCGA TGACCCCGCA
TCCGAAAACG TTGACCTGTG GAACTATCTT TTCGAGCAAC ACCGCGACCG GCTCACTGCC
GATGCCCGCA GTCACGCCGT ACCCACGGCT GATGTCGATG CGAAAGTGCG CAGTGAGAAG
CTCGCGGCAC TGCTGAACAT CGGCATGCTG GTGCTGACCA CGGCAGCAGG GTTTGTACCT
GTGCTGGGCG AGATCATGAC TGGCGTCATG GTCGGTCAGT TGCTGGAAGA GTCCATTGAA
GGCGTCATTG ACTGGAGCGA AGGGGATCGC CAGGCCGCCA AGGCGCACTT GATCGATGTC
GCGGAAAATC TGGTGCTGTT CGGCGTGCTC GCCGGGGCCG GAAAAAGCCT GGCCGGCGTC
AGACCGGCAA CGGCTGCACC CGTGATGGAA AAACTGCATC CGGTCACATT GGCCAGCGGC
GAAACCCGGC TGTGGCGTCC GGATCTGACG GCCTATGAAA GCCCCGATTG GCATCTTCAC
CAACACGAAC CCAATGCCCT GGGGCAATTC ACCGAAGGGA AAAAAAACTG GATCCGAATC
GAGGGCAGGG CGTACGAGAA GCACTGGGAC GGGACAATCA AACGCTGGCG AGTGCGGCAT
CCCCGCGATC CCCGCGCCTA TCAGCCGCCG CTCAGCCACA ACGGCGTCGG TGCCTGGCGC
CATACGCTGG AGCGTCCGTT GTCCTGGGAT CGGCTGACGC TGCTGCGCCG CATCGGGCAT
CGAACCGACA GGCTTTCAGA CACGCAATTG CTGGCCATCG CCGATATCGG CGGTGTCAGC
GACAACGCTT TGCGCAAAAT GCATCTGGAT AACCTGCCGC CGCCGCCCGA ACTGGCCGAT
GCGTTGCAAT TGTTTGAAGC GCCTCGCGGC ACTGCCGCGC CGGACGCGCG AATCATCAAG
CTGCAAACGG CGTGTCCGGG ACTCGGCGAT GCCGCCGCCC GGGAGGTGCT GACCCATGCC
GATGCCGACT CGCTGGCGAT CTTGCAAACC TCCAGGCCAG TCCCTCGCCG CCTGCTGGAG
GAGGCGCGCT GGCACGCAAG TCAGGGGCGG GCGAGTCGCG CGTATGCCGG TTTGTACCTG
GAGCATCCTT CAGCCGACAG TGGGCGTCTG GCTTTGCAGT TGCTCGAGAA ACTGCCGGGC
TGGCCGGGTG ATGTGCGGCT GGAGTTTCGC GATCGGCATC GACAGGGCGG GCTGCTTGAG
GCGATTGGCA GCGAATCAGC GGCACACCGG GTGTATCTGG TGAAACAGGG GCCGTTGTTC
CAGGCATTCA GCGAGCAGGC ATCGAGCGCT CGGCTCGATC GGTTTTTCCC TGCGCTCATG
CGCGCTTTGC CACGGCAAAC AACAGAGGCG CTGGGGATAT TCGGGATGAC GGACGGCGCC
AGGCTACAAC GTGCGATGAT CGATTACGCC ACCGCTCACC CGGAGCAGGT TCGCGCCTTC
GTGGTTCCAC CCGGCCAGGG CGTCCGTGCG TTCACACCGC CAGTGCGTCT CGAAGGTCGT
CGACTGGGGT ATTTCGCCAG TGGGGAGGGC GCAGTAGGGC GTTCGGGTGT CAATCCTTCG
CTGGTGATCC GATTGCTCGA CGTCTATCCG AATCTGGATT TGCGACAGGC CAACGGGGTC
ATCCTCAGAG CGATGAGAGA AGGCCAAAGC GACGCGCAGA TCATGCAAGG GCTGGTCGAA
CGCGCGCTTG AGTGGGAGCG CCTTGAATCA ACGCTCGCTC AATGGGCGGT TCCCGGTGCG
CATGTCGAAG AGCGCTTGCG AGCTGTGCGT CAGTTGAAGC AATGCTGGCG CAATGCACCA
CTTGCTGCCG AAACCCCGGG TTACAGTCAC CTCGAGTGGA TCTGCGACGA CCCGCTGCCA
CCCATGCCGG GGACTTTTCC TCATGTGAAA TCCCTGCGTC TGCAATCGCG CCGTTCAGAT
GCTGCACAAA TGCGTGGATT CCTGCGCGCG TTCCCCGAGA TTCGCCATCT CGATCTCAGT
GAATGTGCGC TGACCACCAA TCCCGTCCCC ACCGATACCC GCGTGAAACT GGTGGAGCTC
AACCTGTCCG GCAATCCGCT GTATCGGCTG GACGTCTCGA ACATGCCGAA CCTGAAGGTC
CTGAACCTTC AAGGGACGCA ACTGCAACAA TGGCCGCGGG CAGCCGAAGA GCTTCGGGCG
CTGCGCTGGC TGGATCTGCG CAACACCCGC ATCACCACGC TGGCGCCGCA AATGCTTGCC
CGTGACGAAC TGTTGATCAA TACCAATCTG ACCGGTGCTC CCCTTACAGA CGAAACGCAA
GTCCGCCTGC GGGCGGCACA ACAACGGGTC GAGTCGACCC TGGGGCTGCC GGAGGGGACG
TTGGCAAGGT TTGCCCTTGA ACCGATACCC GACCCTTACC CGCACCCCAT CGAGACGGGG
TCGCGCGTGG CCTCGCGGTT GTTGCCGCTG CCACCGGCAT TGCCCGCTGA AGAGCATCCA
GGTTCGTTCA TCGGTCGCCT GCAGCGAATC ATTCCCGAGC TGTCGGAGCA GGAGGCCATT
GAAGCAGTCG AGTACCTGCG CATTGGCGCC AGCGACGAAC AAGTCAGTGC GCGGCTCGCT
GAGTGGAACC GGCGGTTCGA CGTGATGACC CGGGAGTTGA ATGGCTGGAT CTTCGTCCGG
CGCAGTTCAG AACAGCGTTT CAGGCATCCG CGAATTTCAT CGGAAGGTCG CGGGGACGCG
GCACAAAAAA TCATCGAGTG CTGGCGACTG GGTCTGCTCG GTGAGGCTGG CGAGGCCGAT
TATGTGCTGG ATCTGGAAGG CACTCTCGGT GTGGGAGCAT TGCCCAGGCT GCCGGAAGCC
TTTACCCATG TGGCGGGCTT GAATCTGCGA GGGCTGGAAC TGAGCGAGCA GGGCCTCAAC
GATTTCCTCC TGTCGTTCAC GCAAGTTGAA ACCCTGGACC TGGCTGCCAA TGCACTGGAG
AACCTGCCGC AAGCCATCGG CGACATGCAG CGGCTTGAGC AACTGGATCT GTCCGCCAAT
CGCTTGCAGG ACGGGCGCAC TGTCGTACAG CGGCTGGAGT CGCTGCAGCA CCTCAGGCGC
CTGAGTCTGA ACTACAACCG TTTCAAATCC TTCAACGCCG CGTCTCTGGA GGCGCTGGAG
CTGCTGGAAC TGAATCACAA CCGACTCAAG GATTTCAACG CAGCGATCCC GCCCTGGCTG
GAGCGGCTGC ATTTGAACGG CAATGACCTG AAGGAATGGC CGGCCGGGGT GCTGCACGCC
GAGCGTCTGC ATACGCTGAA GCTGTTCGGC AATCCGATCA GGGATATTCC GGCACAGGCG
TTTGACGGCC GCCATGATGA ACTGCTTGCC GGAACACATT TATCGGGACA CTTGCGATCA
TTGTCGACAG ACAGTCTGCA ACGGATCCGT GACCATGCTG AGCGAACGGG CGCTCAGTCG
GTGCTGGGAA TATCCCGGGA GACACTTGAA CAATGGCTGG CTGATCGCGA GTGGGAGGAA
CCGGAGGGTT CCTCCTCTTC CGACGACTCG GACCGAATCT GA
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| Protein sequence | MPPIPAADMR PAASQSIHGP FLEQAIPDWL TDATAQRRAE LGSANAALTP GYRQATAQQR
RALNDAVVAS FVAQSRLDRQ LSTLQNIDTF ARPLLTKALQ EQFGVEIDVD VIYLCLNKPV
QMGILSIEVG VFEFIKLPLL QAALHNFAAS ECEPEAFHDS SGFLIEWWTS GVLLPLQTTL
TVPGFITLCR SLDIGAKYQA YLRGYLHAEE VQATLRDNFI GAAKADLRAA AEQALLCNDI
EPADYPMILS VIDGNRHPRL GNKSVWFHEL SLMKHRMTGC VCFSISENDR YTDDLLLYIP
HDPRHPLKRY TRKQLWDMFR KRFSERDSGS SAEVVPTAYQ RFFSRFVAYA DRADYFSQFT
RDASDASAAG RVVLKLLTML NPFTGFTSVH EWPPLRQQPL PEDDPYLAPA VIPREGDDPA
SENVDLWNYL FEQHRDRLTA DARSHAVPTA DVDAKVRSEK LAALLNIGML VLTTAAGFVP
VLGEIMTGVM VGQLLEESIE GVIDWSEGDR QAAKAHLIDV AENLVLFGVL AGAGKSLAGV
RPATAAPVME KLHPVTLASG ETRLWRPDLT AYESPDWHLH QHEPNALGQF TEGKKNWIRI
EGRAYEKHWD GTIKRWRVRH PRDPRAYQPP LSHNGVGAWR HTLERPLSWD RLTLLRRIGH
RTDRLSDTQL LAIADIGGVS DNALRKMHLD NLPPPPELAD ALQLFEAPRG TAAPDARIIK
LQTACPGLGD AAAREVLTHA DADSLAILQT SRPVPRRLLE EARWHASQGR ASRAYAGLYL
EHPSADSGRL ALQLLEKLPG WPGDVRLEFR DRHRQGGLLE AIGSESAAHR VYLVKQGPLF
QAFSEQASSA RLDRFFPALM RALPRQTTEA LGIFGMTDGA RLQRAMIDYA TAHPEQVRAF
VVPPGQGVRA FTPPVRLEGR RLGYFASGEG AVGRSGVNPS LVIRLLDVYP NLDLRQANGV
ILRAMREGQS DAQIMQGLVE RALEWERLES TLAQWAVPGA HVEERLRAVR QLKQCWRNAP
LAAETPGYSH LEWICDDPLP PMPGTFPHVK SLRLQSRRSD AAQMRGFLRA FPEIRHLDLS
ECALTTNPVP TDTRVKLVEL NLSGNPLYRL DVSNMPNLKV LNLQGTQLQQ WPRAAEELRA
LRWLDLRNTR ITTLAPQMLA RDELLINTNL TGAPLTDETQ VRLRAAQQRV ESTLGLPEGT
LARFALEPIP DPYPHPIETG SRVASRLLPL PPALPAEEHP GSFIGRLQRI IPELSEQEAI
EAVEYLRIGA SDEQVSARLA EWNRRFDVMT RELNGWIFVR RSSEQRFRHP RISSEGRGDA
AQKIIECWRL GLLGEAGEAD YVLDLEGTLG VGALPRLPEA FTHVAGLNLR GLELSEQGLN
DFLLSFTQVE TLDLAANALE NLPQAIGDMQ RLEQLDLSAN RLQDGRTVVQ RLESLQHLRR
LSLNYNRFKS FNAASLEALE LLELNHNRLK DFNAAIPPWL ERLHLNGNDL KEWPAGVLHA
ERLHTLKLFG NPIRDIPAQA FDGRHDELLA GTHLSGHLRS LSTDSLQRIR DHAERTGAQS
VLGISRETLE QWLADREWEE PEGSSSSDDS DRI
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