Gene Pfl01_1848 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPfl01_1848 
Symbol 
ID3716401 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas fluorescens Pf0-1 
KingdomBacteria 
Replicon accessionNC_007492 
Strand
Start bp2098368 
End bp2100848 
Gene Length2481 bp 
Protein Length826 aa 
Translation table11 
GC content60% 
IMG OID 
ProductTonB-dependent siderophore receptor 
Protein accessionYP_347580 
Protein GI77458075 
COG category 
COG ID 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value0.817483 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCCGCAA TTCACGAATT GAAACCCCTG CTCAAGGCCC TGGTGATGTC CCGAACGTTG 
CGCTCGCGCT CTGTGCTGTC GGGAATGGGC ATGGCGTGCC TGCTGCCGCT CAGCGCTCAG
GTTCTGGCCG AGGACAAAGC CTTCAATATC GCGGCACAGT CCCTGCCACA GGCGCTGCAG
GCGTTTGGCG AGCAAAGCAA CATGCAGGTC ATCTACAGCG CCGATGATCT GGCGGGCCTC
AAGAGTTTTG CAGTCAAAGG CAACATGACA CCGGAGTCGG CCATCGGCCA GCTCCTGCGC
GGCACCGACG TGCGCTTCAC CGTGGAAGGC AACACCCTGA TGCTGGTGCG CAGTGGCAGC
GCCAAGGGGC TGGAGCTGGG TGCAACCACG ATCAACGCCA GCGCGCTGGG CACCACCACC
GAAGGCACCC ATTCCTACAC CACCGGTGCC GTGACCATCG GCAAGGGCCA GCAGAAACTC
AAGGACATCC CGCAGTCGGT CAGCGTCCTG ACCCGCAAGC GCATGGATGA CCAGAACATC
AGCAATCTGA CCCAGGCAGT CGAAGCCACC ACCGGCCTGA CCGCGCTGAA GTCGCCGGGC
CCGGGCATTT TCATTTACTC CCGTGGTTTC GACATCGAAG CGATCCAGTA CGACGGCGTG
CCGATCCCGC GCAACGTGTA TGCGCTGGGC AGCTACATCA CTGAAAACAT GGCGATCTAC
GACCGCATGG AAGTGATCCG TGGCGCGGCC GGCCTGCTGC AAGGCGCGAA CAGTCCGGGC
GGCGCGATCA ACATGGTGCG CAAGCGCGGC CAGGCCGAAC CGACCGTGAC CCTTTCTGCC
AAGGCGGGCA GCTGGGACCG TTATGGCTCC CAGGCTGACG TAGGTGGCCC GCTGAACGAT
GCCGGCACCA TCCGTGGTCG CGCAGTGGTC AACTATGAAA AAGACCATTC GTTCACCGAT
TACGCCTGGA ATTGGGAACA GACCGTGTAC GGCGCCCTGG ACTTCGACCT GGATGAAGAC
ACCGTGCTCG GTATCGGTTT CAGCAACAAG AAGAGCCACG GCCGTCCATA CCTGCTGGGC
CTGCCGCGTT ACGCCGACGC GAGCAACATC AATCTGCCGC GCTCGACCTA TACCGGTGCA
ACCTGGAACC GTTCGATGAA CGACCAGACT GCGGTGTACG CCGACCTTGA ACACCACTTC
AACGACAGCT GGAAAATCAA GGCCTCGGCC ATCGCCATGA ACGAGTCGAA CGAGGCGACC
TACCAGTTCA TCGCCGGCGT GGTGCCGGTG GGTGGCAGTA CCGGTCCGCG TTTCTCCGAC
TACGCGACCG ATTTTGCCAA CAAGAACCGT GCGTTCGATA TCTACCTCGA CGGCCAGTTT
GAAGGCTTCG GCTTCAAGCA AGGCCTGACC GTGGGCGCCA ACTATTCCAA GTTCACCAGC
GATGACAAAT ACGCTCGCCA GTTCACCCCC GGCGTAGACA TCTTCGACAT CGATCACAAT
CGTCCGCAGA AGTCGTTCGA CATGATCGCC GACGCCGCCA ACCTGGCCGT GAGCACCTAC
GATGTTCGCC AGAAGGGCCT TTACGGCAGT TACAAGATCA ACCTGACCGA TCCGCTGACC
CTGATCCTCG GGGCGCGTAC CAGCTGGTAT GACTTCTCCT TCGACCAGGA CAACTACTTC
GCCCGCGAAT TGCAGGAAGG CGGCGAGAAG AACTCGATCA AGAGCACCGG CCGTGTGACG
CCTTACGTCG GCATGGTGTA TGCGCTCAAC GAACAGTGGT CGGCCTACGG CAGCGTTGCC
GAAGTGTTCA TTCCGCAAAC CCAGTTGACC AAAGAGAAGA CTGCGCTCAA GCCGATCGAA
GGCACCAACT ACGAGCTGGG GATCAAGGGC GAGTTGATGG ATGGCCGCTT CAACACCTCC
CTGGCGTTGT TCCGCTACAT CCAGAAAAAC CGCGCCGTGT CTGACCTGAC CACCGACATC
GAAGGGCCTG AGGCCTGCAA CGGCTGGTAC TGCTCGACGG CGTCGGGCAA GGTTCGCAGC
CAGGGTCTGG AGGCGGAAAT CGCCGGTGAA CTGTTCGATG GCATGCAGAT CTCCAGCGGC
TATACCTACA ACACCACCAA GTTCCTTGAA GACTCCGACC TCAAGGGCAA GCGCTTCGCC
ACCGGTACGC CGATGCACAT GTTCCGTCTC TGGGGTGACT ACACCCTGCC GGGCGACTTC
AACAAGGTCA GCGTCGGTGC CGGCGTGAAT GCCCAGAGCA GCACGGTCAG CTTCGACCGC
AGCTTCGATC TGCCGGGCTT TGCCATCTGG GGTTCGCGTG TTGCCTACCA GGCCACCGAT
GAGGTCAATC TGGCGGTCAA CCTGAACAAC ATGTTCGACA AGCGCTACAT CATTCCGGCC
TTCGCCCAGA TCAACAGCAA CAGCTACTAC GGCGACCCGC GTAACGTGAT GTTCAGCGTG
ACGTACAAAC CGCAGTTCTG A
 
Protein sequence
MSAIHELKPL LKALVMSRTL RSRSVLSGMG MACLLPLSAQ VLAEDKAFNI AAQSLPQALQ 
AFGEQSNMQV IYSADDLAGL KSFAVKGNMT PESAIGQLLR GTDVRFTVEG NTLMLVRSGS
AKGLELGATT INASALGTTT EGTHSYTTGA VTIGKGQQKL KDIPQSVSVL TRKRMDDQNI
SNLTQAVEAT TGLTALKSPG PGIFIYSRGF DIEAIQYDGV PIPRNVYALG SYITENMAIY
DRMEVIRGAA GLLQGANSPG GAINMVRKRG QAEPTVTLSA KAGSWDRYGS QADVGGPLND
AGTIRGRAVV NYEKDHSFTD YAWNWEQTVY GALDFDLDED TVLGIGFSNK KSHGRPYLLG
LPRYADASNI NLPRSTYTGA TWNRSMNDQT AVYADLEHHF NDSWKIKASA IAMNESNEAT
YQFIAGVVPV GGSTGPRFSD YATDFANKNR AFDIYLDGQF EGFGFKQGLT VGANYSKFTS
DDKYARQFTP GVDIFDIDHN RPQKSFDMIA DAANLAVSTY DVRQKGLYGS YKINLTDPLT
LILGARTSWY DFSFDQDNYF ARELQEGGEK NSIKSTGRVT PYVGMVYALN EQWSAYGSVA
EVFIPQTQLT KEKTALKPIE GTNYELGIKG ELMDGRFNTS LALFRYIQKN RAVSDLTTDI
EGPEACNGWY CSTASGKVRS QGLEAEIAGE LFDGMQISSG YTYNTTKFLE DSDLKGKRFA
TGTPMHMFRL WGDYTLPGDF NKVSVGAGVN AQSSTVSFDR SFDLPGFAIW GSRVAYQATD
EVNLAVNLNN MFDKRYIIPA FAQINSNSYY GDPRNVMFSV TYKPQF