Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Pfl01_1848 |
Symbol | |
ID | 3716401 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas fluorescens Pf0-1 |
Kingdom | Bacteria |
Replicon accession | NC_007492 |
Strand | + |
Start bp | 2098368 |
End bp | 2100848 |
Gene Length | 2481 bp |
Protein Length | 826 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | |
Product | TonB-dependent siderophore receptor |
Protein accession | YP_347580 |
Protein GI | 77458075 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 0.817483 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGTCCGCAA TTCACGAATT GAAACCCCTG CTCAAGGCCC TGGTGATGTC CCGAACGTTG CGCTCGCGCT CTGTGCTGTC GGGAATGGGC ATGGCGTGCC TGCTGCCGCT CAGCGCTCAG GTTCTGGCCG AGGACAAAGC CTTCAATATC GCGGCACAGT CCCTGCCACA GGCGCTGCAG GCGTTTGGCG AGCAAAGCAA CATGCAGGTC ATCTACAGCG CCGATGATCT GGCGGGCCTC AAGAGTTTTG CAGTCAAAGG CAACATGACA CCGGAGTCGG CCATCGGCCA GCTCCTGCGC GGCACCGACG TGCGCTTCAC CGTGGAAGGC AACACCCTGA TGCTGGTGCG CAGTGGCAGC GCCAAGGGGC TGGAGCTGGG TGCAACCACG ATCAACGCCA GCGCGCTGGG CACCACCACC GAAGGCACCC ATTCCTACAC CACCGGTGCC GTGACCATCG GCAAGGGCCA GCAGAAACTC AAGGACATCC CGCAGTCGGT CAGCGTCCTG ACCCGCAAGC GCATGGATGA CCAGAACATC AGCAATCTGA CCCAGGCAGT CGAAGCCACC ACCGGCCTGA CCGCGCTGAA GTCGCCGGGC CCGGGCATTT TCATTTACTC CCGTGGTTTC GACATCGAAG CGATCCAGTA CGACGGCGTG CCGATCCCGC GCAACGTGTA TGCGCTGGGC AGCTACATCA CTGAAAACAT GGCGATCTAC GACCGCATGG AAGTGATCCG TGGCGCGGCC GGCCTGCTGC AAGGCGCGAA CAGTCCGGGC GGCGCGATCA ACATGGTGCG CAAGCGCGGC CAGGCCGAAC CGACCGTGAC CCTTTCTGCC AAGGCGGGCA GCTGGGACCG TTATGGCTCC CAGGCTGACG TAGGTGGCCC GCTGAACGAT GCCGGCACCA TCCGTGGTCG CGCAGTGGTC AACTATGAAA AAGACCATTC GTTCACCGAT TACGCCTGGA ATTGGGAACA GACCGTGTAC GGCGCCCTGG ACTTCGACCT GGATGAAGAC ACCGTGCTCG GTATCGGTTT CAGCAACAAG AAGAGCCACG GCCGTCCATA CCTGCTGGGC CTGCCGCGTT ACGCCGACGC GAGCAACATC AATCTGCCGC GCTCGACCTA TACCGGTGCA ACCTGGAACC GTTCGATGAA CGACCAGACT GCGGTGTACG CCGACCTTGA ACACCACTTC AACGACAGCT GGAAAATCAA GGCCTCGGCC ATCGCCATGA ACGAGTCGAA CGAGGCGACC TACCAGTTCA TCGCCGGCGT GGTGCCGGTG GGTGGCAGTA CCGGTCCGCG TTTCTCCGAC TACGCGACCG ATTTTGCCAA CAAGAACCGT GCGTTCGATA TCTACCTCGA CGGCCAGTTT GAAGGCTTCG GCTTCAAGCA AGGCCTGACC GTGGGCGCCA ACTATTCCAA GTTCACCAGC GATGACAAAT ACGCTCGCCA GTTCACCCCC GGCGTAGACA TCTTCGACAT CGATCACAAT CGTCCGCAGA AGTCGTTCGA CATGATCGCC GACGCCGCCA ACCTGGCCGT GAGCACCTAC GATGTTCGCC AGAAGGGCCT TTACGGCAGT TACAAGATCA ACCTGACCGA TCCGCTGACC CTGATCCTCG GGGCGCGTAC CAGCTGGTAT GACTTCTCCT TCGACCAGGA CAACTACTTC GCCCGCGAAT TGCAGGAAGG CGGCGAGAAG AACTCGATCA AGAGCACCGG CCGTGTGACG CCTTACGTCG GCATGGTGTA TGCGCTCAAC GAACAGTGGT CGGCCTACGG CAGCGTTGCC GAAGTGTTCA TTCCGCAAAC CCAGTTGACC AAAGAGAAGA CTGCGCTCAA GCCGATCGAA GGCACCAACT ACGAGCTGGG GATCAAGGGC GAGTTGATGG ATGGCCGCTT CAACACCTCC CTGGCGTTGT TCCGCTACAT CCAGAAAAAC CGCGCCGTGT CTGACCTGAC CACCGACATC GAAGGGCCTG AGGCCTGCAA CGGCTGGTAC TGCTCGACGG CGTCGGGCAA GGTTCGCAGC CAGGGTCTGG AGGCGGAAAT CGCCGGTGAA CTGTTCGATG GCATGCAGAT CTCCAGCGGC TATACCTACA ACACCACCAA GTTCCTTGAA GACTCCGACC TCAAGGGCAA GCGCTTCGCC ACCGGTACGC CGATGCACAT GTTCCGTCTC TGGGGTGACT ACACCCTGCC GGGCGACTTC AACAAGGTCA GCGTCGGTGC CGGCGTGAAT GCCCAGAGCA GCACGGTCAG CTTCGACCGC AGCTTCGATC TGCCGGGCTT TGCCATCTGG GGTTCGCGTG TTGCCTACCA GGCCACCGAT GAGGTCAATC TGGCGGTCAA CCTGAACAAC ATGTTCGACA AGCGCTACAT CATTCCGGCC TTCGCCCAGA TCAACAGCAA CAGCTACTAC GGCGACCCGC GTAACGTGAT GTTCAGCGTG ACGTACAAAC CGCAGTTCTG A
|
Protein sequence | MSAIHELKPL LKALVMSRTL RSRSVLSGMG MACLLPLSAQ VLAEDKAFNI AAQSLPQALQ AFGEQSNMQV IYSADDLAGL KSFAVKGNMT PESAIGQLLR GTDVRFTVEG NTLMLVRSGS AKGLELGATT INASALGTTT EGTHSYTTGA VTIGKGQQKL KDIPQSVSVL TRKRMDDQNI SNLTQAVEAT TGLTALKSPG PGIFIYSRGF DIEAIQYDGV PIPRNVYALG SYITENMAIY DRMEVIRGAA GLLQGANSPG GAINMVRKRG QAEPTVTLSA KAGSWDRYGS QADVGGPLND AGTIRGRAVV NYEKDHSFTD YAWNWEQTVY GALDFDLDED TVLGIGFSNK KSHGRPYLLG LPRYADASNI NLPRSTYTGA TWNRSMNDQT AVYADLEHHF NDSWKIKASA IAMNESNEAT YQFIAGVVPV GGSTGPRFSD YATDFANKNR AFDIYLDGQF EGFGFKQGLT VGANYSKFTS DDKYARQFTP GVDIFDIDHN RPQKSFDMIA DAANLAVSTY DVRQKGLYGS YKINLTDPLT LILGARTSWY DFSFDQDNYF ARELQEGGEK NSIKSTGRVT PYVGMVYALN EQWSAYGSVA EVFIPQTQLT KEKTALKPIE GTNYELGIKG ELMDGRFNTS LALFRYIQKN RAVSDLTTDI EGPEACNGWY CSTASGKVRS QGLEAEIAGE LFDGMQISSG YTYNTTKFLE DSDLKGKRFA TGTPMHMFRL WGDYTLPGDF NKVSVGAGVN AQSSTVSFDR SFDLPGFAIW GSRVAYQATD EVNLAVNLNN MFDKRYIIPA FAQINSNSYY GDPRNVMFSV TYKPQF
|
| |