| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Pfl01_0700 |
|---|
| Symbol | |
|---|
| ID | 3714459 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas fluorescens Pf0-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007492 |
|---|
| Strand | + |
|---|
| Start bp | 826868 |
|---|
| End bp | 829045 |
|---|
| Gene Length | 2178 bp |
|---|
| Protein Length | 725 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | |
|---|
| Product | prenyltransferase/squalene oxidase |
|---|
| Protein accession | YP_346433 |
|---|
| Protein GI | 77456928 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0951082 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCACTGC ATCCGCAGTT TCTATTTGAT CAAGGCCTCA AGGACATCGA GCACGGCGGC
TTTTTCGCCG TGACCGATGC CAGTGGCGAG GTTGCGATTT CCAGCGACAA GCAGTTGCAG
GATCAGGTCG CGGCGACGCT CTACCAGGCC GAGCACGGCG ACGATGTCGA ACTGCGTTTT
GCCCATGACG GGCTGATGCG TTTGCATGAT GCTTCGAATG GCGGTTTCCA CGAACTGGCC
GACCGCTACT GGACGCCGCA CGGCTCCGGA CGTTGCCGCA CGCTGGCGCT GCAACTGGAC
GCACTGGCGG CATTGATTGC CTATCAACGG AGGGTGCCGC AGGACGCAGC AAACAATGCC
GCGATCCACG GCCTGCTGGA AAAGGTCGAA GCGCTCTACG CCCGTTCCAC GCTCGCCGGT
CTGTACAGCA GCGACTGGTC GACGCCGCTG GAGCTGGCGA CCTCGATCAA TCTCGACATC
AGCGCCACGG CCTTGCTCGC GCGTATCGAC AATCAGCCGT TGGGTCTCGG CTTGGTCGGG
CACTTGCAGA TTCATGCAGA AAACCTGATC GGCCGGGTGG CCGGCAGCGA CAGCCAATCT
TGTGTCGATG TGGCGCTGAC CCGTTGCGGT GTGCGGGCTC AGGTAAGCCT GGTGCTGGCG
CAATTGGCTG ATGCGCGGGA CGACAATGCG CTGTCGAATC TGGCTCGTTC GTTCCTGCTG
CAAACCCTGG CGCTGTTTCG CGATCCGGCG TACGGCGGGT ATTGGGATCG GGTCGGGATC
AACGGCAAAG TGCGTTGCGA CTGGCACACC TCGTACAAAA ATCACGAGTC GCCATTCCCG
ATCAAGGCCG CCTATGACGT GGCGTTGCTG TTGCAGGCGA TTCAGGCCTT GCCGTCCGGC
GCCAGCGAAG CGGATCGGGC TTCGGTGACG GCGGCGTTGC TGGAGTTTCA TGACGCGCGC
AATGGCGGGC TGTTCATGGG CAAGGGCTAT TTCTGGTCGA CGCCGGATGA TCCGACCGTG
CCGTTCATTC GGCAGTTCTG GGCGCCGCCG CGTCAGCCGG GGATTTTCAG TATCGGCAAC
CTGACGTACC TGCCGCTGCA CCTGAAAAGC CTGAAAACCC AGCTCGCCGC GGCCCACGCC
TTGCAGTCCA TCGAACCGGT CGTTGCCGTC ACTCATCATG ACGATGCAGC GCTGGTAAAC
CGTGAGTTGC AAGTGATCGA TGGCGGTGGC GATGTGCAGC GGATTCACCC GAATGGCGTG
CCGACCATCA ATGTTGATCT GCAGCGTTAT CTGGCGTGGC TGGCCAAGGC CCGGGCGTCG
AATGAAACGC CTTACGGGCT GACGGCCGAA ACCGCGCCGC TGGGTTTCCG TGCCGACAAA
ACCTGGCAGG TGTTCTCCGG GTTGCACGTG ATCTCAGACT TGCACGCGCT GGGTCTGCAA
ATCGAAAACA AGGCCAGCCT GATCGATTGC ATCAGGGCCT CGCAAAACAC CGACGGCGGA
TTTGCCGAGC AACCGGGGCA TCTCAGCGAT GTGTTCGCCA CCTACTGCGC GGTGCTGTCG
CTGCGAGTGC TGGGCGCATT GCCGAACGAT ATCGGCGGTT GCGTGCGTTA CCTGCAAGCG
TGTCAGAACC CGGACGGCGG GTTCGGCGAT GTGCCGGGTT TCGGCTCGGA CATCTGGCAC
ACCAACCTGG CGGTGCTGTC GCTGCATGCG CTTGAAGCCA AGGCGCCGGA CGAGCAGGGC
GTGATGGCGT TTGCCTTGCG CTGCCGCTCG GCCGACGGCG GTTTCGCCAA CAAGCCGGGT
TATCCGCCGG ACGCGTTTTC GGTGTACCGC GTGGTGTCGA CGCTGTTCAT TCTCAACCGA
CGCATCGTTG ATGCCGAACA GACCGTCGCT TGGCTTCAGA GCCTGCAACT GGCCAACGGC
TCGTTCCACT ACCGGCCGGG TAAAGCGGTC AGCCTGGTGG GTACTTACAT GGCTATCGCA
GCAATGTATC TGCTCGACGC GCAGCCGACG TATCTGCAGG AATCGAAAGA CTGGATCGCT
GCCCATCAGA AGCAGGACGG TGGATTCGGC CCACTCAATG CGACCTCGGC AACCACCGAC
GAAAGCTTCG TCTGCATCCA GACGCTGCTG ATTCTCGAAC AAGGTCTGTC GCAATACTGG
GTGGCGTTGT TGAACTGA
|
|---|
| Protein sequence | MSLHPQFLFD QGLKDIEHGG FFAVTDASGE VAISSDKQLQ DQVAATLYQA EHGDDVELRF
AHDGLMRLHD ASNGGFHELA DRYWTPHGSG RCRTLALQLD ALAALIAYQR RVPQDAANNA
AIHGLLEKVE ALYARSTLAG LYSSDWSTPL ELATSINLDI SATALLARID NQPLGLGLVG
HLQIHAENLI GRVAGSDSQS CVDVALTRCG VRAQVSLVLA QLADARDDNA LSNLARSFLL
QTLALFRDPA YGGYWDRVGI NGKVRCDWHT SYKNHESPFP IKAAYDVALL LQAIQALPSG
ASEADRASVT AALLEFHDAR NGGLFMGKGY FWSTPDDPTV PFIRQFWAPP RQPGIFSIGN
LTYLPLHLKS LKTQLAAAHA LQSIEPVVAV THHDDAALVN RELQVIDGGG DVQRIHPNGV
PTINVDLQRY LAWLAKARAS NETPYGLTAE TAPLGFRADK TWQVFSGLHV ISDLHALGLQ
IENKASLIDC IRASQNTDGG FAEQPGHLSD VFATYCAVLS LRVLGALPND IGGCVRYLQA
CQNPDGGFGD VPGFGSDIWH TNLAVLSLHA LEAKAPDEQG VMAFALRCRS ADGGFANKPG
YPPDAFSVYR VVSTLFILNR RIVDAEQTVA WLQSLQLANG SFHYRPGKAV SLVGTYMAIA
AMYLLDAQPT YLQESKDWIA AHQKQDGGFG PLNATSATTD ESFVCIQTLL ILEQGLSQYW
VALLN
|
|---|
| |