| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSP_3993 |
|---|
| Symbol | |
|---|
| ID | 3711793 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodobacter sphaeroides 2.4.1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007488 |
|---|
| Strand | - |
|---|
| Start bp | 53501 |
|---|
| End bp | 56839 |
|---|
| Gene Length | 3339 bp |
|---|
| Protein Length | 1112 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640069344 |
|---|
| Product | hemolysin-type calcium-binding protein |
|---|
| Protein accession | YP_345211 |
|---|
| Protein GI | 77404637 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 0 |
|---|
| Plasmid unclonability p-value | 0.515402 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGTCTG CCAGACAAGT CGCGGACACA TGGTGGGTGA ACGATCAGAC GCCCGATAAT
CCTTATGGCA AGAGCGAGGA CTACGATGCC TTCCTCGATT ATCTGGGGGC GCTGAACCGC
AGCCTCACCC CGGCCATCGC GGCCGAGCCG CTCCGGATCA ACGTGACCGG CCTGAACGAC
CACCCGGATT ACAAGGCGGC CGCCATCGGC GCGCTGCAGA CCTGGGCCAC GGTCACGCCG
CTCCAGTTCG AGATCGTGGA CGACGCGCCC TTCGACCGCG CGACGGACTG GATGGAGGTG
GTGAGCCCCG AGATCGGCGA ACCGAGCGAC GGCAGCGCCT TCTCGAGCAA CCGCTATGTC
AGCATCGGCC AGCGCTTTCA CGACACCGAG CCCGACAAGA CCGCTCTCGG CGGCTATGTG
TTCGACTCGT TCGTCCATGA ATTCGGCCAT GAATTCGGCC TGAACCACCC CGGCCTCTAC
AATTACAGCG GTCCCGGCGG CGTGCAGATC AACTATCTGA ACAACGCGAC CTGGACCTAC
GACCGGCAGC AATACAGCGT CATGTCCTAT TTCGACGGCA TCGACGTGGG CGAGACGAGC
CGCTGGTCCG CCACCACGCC GCTCATGGCC GATATCGAGG CCGTGATCCG CCGCTTCTTC
TCGACGGTGG ACGAGGACGG GGTGCGGACC TACCAGACCA TCGACCTCAA CACGGGCGAC
GACATCTACG GCTTCAACAG CAGCGTCTTC GGCTACGAGC TGATGTCCGA GGGGCTGCAG
CACGACATCG GCTTCGTGAT CCACGACACC GGCGGCATGG ACACGATCGA CTTCTCGGGC
TCGACGGCGG GCACGATCCT CGATCTGCGC GCAGGCCGGT TCTCGAGCGT GAACGGCCAC
AGCAACAACG TCTCGATCTT CGCGGGCCAC AACGAGGACG CCAGCGACTA TTACATCGAG
GCGGGCATCG GCAGCCGCTT CGCCGATACG CTCATCGGCA ATGACGGCGA CAACGTGCTC
GACGGGCGCG GCGGCGGCGA CCGGATGGCG GGCTTCGGCG GCGACGACAC CTATTTCGTC
GATTCCGCCG ACGATATCGT GCGCGAATTC GCCGACGGCG GGAACGACAC GATCATCGTG
CTGACCGAGG GGCTCGATCT GGGCGAGGTC GCCAATGTCG AGACGATCAT CTACGCCGGC
GGCTCGGCCC CCGCTCCCGA CGAGGGGACG CCAGCCCCGG TCGCGGGCGC GGGCGGCACG
CTCGGCAGCA TCCTCATGGG CACCGAGGGC ACGGACACGC TGAACGGCGG CGCGGGCGGC
AACACGATCT TCGGCCTCGC CGGCGACGAC CTGCTGATCG GCGGGCGCGA CAGCCTCGCC
AGCCGCGACA TCAACAACAC GATCGCCATC GCGGACCTCG AGGACCAGAC CGAAAGCGAC
GACGGCAACG ACGCGCTCTA TGGCGGGGCC GGCAACGACA CGATCATGGG CGGTGCGGGC
GACGACACGC TCGACGGCGG CGCGGGCAAC GACCTCTTGC GCGGTCAGGA CGGCGTCGAC
GTGTTCCGCG GCGGTGCGGG CATCGACACC GTCGATTACG GGATGGAAAG CCCGTTCCAG
CTTCTGGTCA ATCTCGAGAC CAACGTGGCG AGCGGCGGCA CCGCCTCGGG CGATACCTTC
TACAGCATCG AGAATCTGAT CGGCTCGGAC GACCGGATCG ACCGCTTCAT CGGCACGTCG
GACGCCAACC ACTTCTGGGG CCGGGGCGGC GGCGACTATT TCAACGGCCG CGGCGGCGAC
GACATCCTCG ACGGCGGAGC GGACGGCGAC ATCCTCTATG GCGAGGGCGG CAACGACACG
ATCATCGGCG GCGCGGGTCA GGATTACATG AACGGCGGCG CGGGCATCGA CACGGTGGTC
TATGCCGGAA GCTCGGCCGC GGTGACGGTC GATCTGTCGC AGGGCACCGC ACGCGGCGGC
GACGCCGACG GGCCGGTGCA GATCGTGGGC CGCGGCTCGG TGATCCGCCA CGACATTCTC
GCAGGGTTCG AGAATGTGGT GGGCTCGTTC CACGACGACC GGCTGATCGG CGACGGGAAG
TCGAACGTCC TCTCCGGCGG ACGGGGCGAC GACATCCTGA CCGGCGGCGG CGGCGCCGAC
CGGCTGAACG GCGGCGCAGG CCGCGACACG GCCGACTACA GCACCGCGGC GCGCGGCGTG
GCCCTGTCGC TGACGCTGGG CTCGTCGGAC GGCGACAGCT ACCGCTCGAT CGAGAATCTC
GCGGGCTCGG GCCACGCCGA CGTGATGATC GGCGACACGG CGGCCAACGT GCTGACCGGT
CAGGGCGGCA ACGACACGCT CTTCGGGCGG GGCGGCGACG ACGTCCTGCT CGGCGATTTC
GCCCCCGAGG GCACGCCGGT GCCGCGGCCG GGGCTGGGCA CGGGCTATGC CACCCTCGGG
CCGGAGGCCG CCAACAACTC GATCGAGACG GCCTTCGACC TGTCGGAGAA CTTCTCGCTG
ACCGAGGATC CCGACATCTT CGACTCGACC AGCGTGCTGC ACACGACGGT CACGGCGACC
GGCAACGGCC AGGGGGGCTA TTACAGCCTC GATCTCGCCG CGGGCACGGT GGTGACGGTG
GATATCGACG GGATCGCCGA TCCCAATGTC CATGACAGCT GGGTGCGCGT GCTCGACAGC
GAGGGCCGCA TCGTGGCCGA GAACGACGAC GGCGGCGGGG ATCCGGGCTC GACCAGCAGC
CGCGATTCCA GCACCGTCTT CACCGTCGAG GAAACCGGCA CCTACTATAT CGTGGAAGGC
AGCTGGTCCG AGGATGCGCC CGGCGACGGC TGGAGCGACG CGGTTCCGGA AGGGTCCGAC
TACAAGCTGA ACGTGTCGGT GGAATTCCCG CCCGAGCCGG TCCGGCCCGG CGAGGCGGGG
CGCGACCGGC TGGTCGGCGG CGCGGGCGGC GACCTGCTCG ACGGCGGGCT CGCGGCCGAT
GTGCTTCTCG GCGGCGCGGG CGAGGACAGC TTCCGCTTCT CGACCGCGCT CGGCGCGGGC
AATGTCGACC GGATCCTCGA TTTCGAGGTG GGCGAGGATC TCATCCTGCT CGACCGCGCG
ATCTTCGCCG AAGCGGGCGG CGCGGGCACC CTCTCGTTCG GCGCCTTCCA CCGCAGCCCC
TCGGGCGCCG CGCAGGATGC GTCCGACCGG ATCCTCTACG ACACCGACAG CGGCTTCCTG
TCCTACGACG CCGACGGATC GGGCGAGACG GCCGCGGTGC GCTTTGCGCA GGTGAGCGCG
GGGCTCTCGC TCACGGCGGA CGACTTCTAC CTCGTGTAA
|
|---|
| Protein sequence | MPSARQVADT WWVNDQTPDN PYGKSEDYDA FLDYLGALNR SLTPAIAAEP LRINVTGLND
HPDYKAAAIG ALQTWATVTP LQFEIVDDAP FDRATDWMEV VSPEIGEPSD GSAFSSNRYV
SIGQRFHDTE PDKTALGGYV FDSFVHEFGH EFGLNHPGLY NYSGPGGVQI NYLNNATWTY
DRQQYSVMSY FDGIDVGETS RWSATTPLMA DIEAVIRRFF STVDEDGVRT YQTIDLNTGD
DIYGFNSSVF GYELMSEGLQ HDIGFVIHDT GGMDTIDFSG STAGTILDLR AGRFSSVNGH
SNNVSIFAGH NEDASDYYIE AGIGSRFADT LIGNDGDNVL DGRGGGDRMA GFGGDDTYFV
DSADDIVREF ADGGNDTIIV LTEGLDLGEV ANVETIIYAG GSAPAPDEGT PAPVAGAGGT
LGSILMGTEG TDTLNGGAGG NTIFGLAGDD LLIGGRDSLA SRDINNTIAI ADLEDQTESD
DGNDALYGGA GNDTIMGGAG DDTLDGGAGN DLLRGQDGVD VFRGGAGIDT VDYGMESPFQ
LLVNLETNVA SGGTASGDTF YSIENLIGSD DRIDRFIGTS DANHFWGRGG GDYFNGRGGD
DILDGGADGD ILYGEGGNDT IIGGAGQDYM NGGAGIDTVV YAGSSAAVTV DLSQGTARGG
DADGPVQIVG RGSVIRHDIL AGFENVVGSF HDDRLIGDGK SNVLSGGRGD DILTGGGGAD
RLNGGAGRDT ADYSTAARGV ALSLTLGSSD GDSYRSIENL AGSGHADVMI GDTAANVLTG
QGGNDTLFGR GGDDVLLGDF APEGTPVPRP GLGTGYATLG PEAANNSIET AFDLSENFSL
TEDPDIFDST SVLHTTVTAT GNGQGGYYSL DLAAGTVVTV DIDGIADPNV HDSWVRVLDS
EGRIVAENDD GGGDPGSTSS RDSSTVFTVE ETGTYYIVEG SWSEDAPGDG WSDAVPEGSD
YKLNVSVEFP PEPVRPGEAG RDRLVGGAGG DLLDGGLAAD VLLGGAGEDS FRFSTALGAG
NVDRILDFEV GEDLILLDRA IFAEAGGAGT LSFGAFHRSP SGAAQDASDR ILYDTDSGFL
SYDADGSGET AAVRFAQVSA GLSLTADDFY LV
|
|---|
| |