Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSP_3953 |
Symbol | gtpD |
ID | 3712030 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodobacter sphaeroides 2.4.1 |
Kingdom | Bacteria |
Replicon accession | NC_007488 |
Strand | - |
Start bp | 99154 |
End bp | 99885 |
Gene Length | 732 bp |
Protein Length | 243 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 640069385 |
Product | ABC amino acid transporter, inner membrane subunit |
Protein accession | YP_345252 |
Protein GI | 77404678 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0765] ABC-type amino acid transport system, permease component |
TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.801361 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGACCTGC TTTACGAATA TCGCGTCTTC CTGCTCGGCG GACTGATCGA GACGCTGAAG ATGTCGGCGG TCGTGGCGAT GGGCGGCACC TTCTGCGCCA TCCTCCTCAC CATGGGCATC ACGGCCAAAC CGCGGCTTCT GAACCGCGCG AGCTATGCGC TGGTCGAGCT GCTGCGCGAC CTGCCGCTGA TGGTGACGGT GCTGCTCGTC TATTTCATGC TGCCCATGAC GGGGCTCGGG CTCAATCCGT TCTGGTCCTG CTGCCTCGCG ATCTCGGTCT GGGGCGGCGC CAACGGGGCG CAGATCCTGC GCGCGGGGCT CGCCTCCGTG GGCCGGGGCC AGCGCGAGAC GGCGGCGGCC TTCGGCTTCG GCCCGGTGAA GACGCTCCTC CTCGTGACGC TGCCGCAGGC GATGCCGGTG ATCGTGCCGC CCTATGTGGG GCTTCTGACC GCGCTCGTGC AGGCCACGTC GCTCGGCGCG GTGGTGGGGG CGCAGGAACT GCTGCGCACG GGCCAGGTGC TGATCGAGCA GACGACCATC ATGCAGGGCG GCAGCCCGGC CTATCTCGTC TACGGTTCGA TCCTCGTGGT CTATTTCACC CTCTGCACCC TGATCTCGCT GGTGGGCGGG CGCATCGAGC GCCATTTCCT GAAGCCCTAT TCCGCCGCGA GCGGGGCGCA GGCCGAGGAC CGGGCGCATG AGATCGACGC CGCCCTCTCG GTGAGGACCT GA
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Protein sequence | MDLLYEYRVF LLGGLIETLK MSAVVAMGGT FCAILLTMGI TAKPRLLNRA SYALVELLRD LPLMVTVLLV YFMLPMTGLG LNPFWSCCLA ISVWGGANGA QILRAGLASV GRGQRETAAA FGFGPVKTLL LVTLPQAMPV IVPPYVGLLT ALVQATSLGA VVGAQELLRT GQVLIEQTTI MQGGSPAYLV YGSILVVYFT LCTLISLVGG RIERHFLKPY SAASGAQAED RAHEIDAALS VRT
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