Gene Noc_2820 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_2820 
Symbol 
ID3705569 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand+ 
Start bp3196829 
End bp3197470 
Gene Length642 bp 
Protein Length213 aa 
Translation table11 
GC content52% 
IMG OID637739296 
ProductTetR family transcriptional regulator 
Protein accessionYP_344797 
Protein GI77166272 
COG category[S] Function unknown 
COG ID[COG5590] Uncharacterized conserved protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.848786 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAGAAAA TAGCGAGCAC CTCTGATATC ATTCTTGATA CTGCCTTGGA ACTGGCCGAA 
GAAACTTCTT GGGAGAATGT GCGCCTGTAT CACGTTGCCC AACGGGCAGG ATTGACTTTA 
AACCATATTC GCCGCTATTT CAGGGAGAAA GAAGAACTGG TGGACGCATG GCTGGATCGA 
GCTGACCGGG CCATGCTGGA TGAAACAAAC TGTCCTCACT TCTTGGCCCT CTCTCCTCGA 
GAGCGCCTAA ATCAGCTATT TATGGCATGG CTGGAAGCTC TCTCTCCACA CCGCCCGGTG 
ATGCGCCAAA TGGTATTTAA CCGGCTCGAA CCAGGCCACC TTCATATGCA GGTGGCAAGC 
CTATTACGCA TCAGCCGCAC GGTGCAATGG GCTCGGGAGG CCGCTCAACG GGAGCAAACC 
TTTCTATTTC GGGCGTTTGA TGAAACTGCT TTGACCTCCA CCTACCTGGC CGCTTTTCTC 
TGTTGGCTAA ATGATTCCAC CCAAAATTAT CAAAGAACCC GTCGATTACT CGATAGAATA 
CTGTATCTAG GCGAAGTCAT AGAGTCTCTT AAACCCTCGT TCCTGCGACC CTACCAACCG 
GAAGAAAATT TCACGCCGGC TCCGCCCCAA GAGGCCCGTT AA
 
Protein sequence
MEKIASTSDI ILDTALELAE ETSWENVRLY HVAQRAGLTL NHIRRYFREK EELVDAWLDR 
ADRAMLDETN CPHFLALSPR ERLNQLFMAW LEALSPHRPV MRQMVFNRLE PGHLHMQVAS 
LLRISRTVQW AREAAQREQT FLFRAFDETA LTSTYLAAFL CWLNDSTQNY QRTRRLLDRI 
LYLGEVIESL KPSFLRPYQP EENFTPAPPQ EAR