| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_2390 |
|---|
| Symbol | |
|---|
| ID | 3704643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | - |
|---|
| Start bp | 2737869 |
|---|
| End bp | 2738648 |
|---|
| Gene Length | 780 bp |
|---|
| Protein Length | 259 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 637738873 |
|---|
| Product | AcfC-like protein |
|---|
| Protein accession | YP_344378 |
|---|
| Protein GI | 77165853 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4588] Accessory colonization factor AcfC, contains ABC-type periplasmic domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAATTTT TATCGTTGAT CATGATGTGG GCACTGGTTT TTAGCGCCCA TGGAGTTGAA
TTATACGTAT ATGGTCCTGG CGGCCCGGCT CCGGCTATGA AGGCCGCAGC GGCCGCTTTT
GAAAAGGCCT CCGGAACGAA GGTGGTGGTT ACGGCTGGTC CAACCCCAAC TTGGATTGAG
GCCGCGCGGG GCAATGCCGA TCTGCTCTAT AGCGGCTCGG AGCACATGAT GTCGGACTTT
CTCCTCATAC TGGGATCGAT GCTGGCAGCA GATACGGTGC GGCCGATGTA TTTACGGCCA
GCGGCGATCC TTGTGCGGCC GGGCAATCCT GCTGGCATTA GCGGTTTAGC GGATCTGCTC
AAACCTGGCC GCCGCGTACT GGTGGTCCAT GGCGCGGGCC AAGTTGGCTT GTGGGAAGAT
ATTGTTGGCC GCGGCGGCGA CATCACCACC TTACGGGCGC TGCGCGGCAA TATCGTGCAT
TACGCCACAA ATACGGGCGC AGCCAAGGAA CGCTGGCTGA CGGACCCAAA AATCGATGCC
TGGATTGTTT ATAATATTTG GGCTATCGCC AATCCCGGCA TTGCCGATGT GATTCCCTTG
GAGCCCCACT ATCGCATCTA TCGTGATTGT GGAATAGTTT TTACCGAGCG CTCCCGCACC
AAACCGGAAG CGCAAGCCTT TACTCGTTTT CTCGAAGGCG ATGAGGGCCG AGCTATCTTT
GAGCGGTTTG GCTGGATGAG GCGCGATACC GCCGTTTCTG CAGCCAACGA GGGGTCCTGA
|
|---|
| Protein sequence | MKFLSLIMMW ALVFSAHGVE LYVYGPGGPA PAMKAAAAAF EKASGTKVVV TAGPTPTWIE
AARGNADLLY SGSEHMMSDF LLILGSMLAA DTVRPMYLRP AAILVRPGNP AGISGLADLL
KPGRRVLVVH GAGQVGLWED IVGRGGDITT LRALRGNIVH YATNTGAAKE RWLTDPKIDA
WIVYNIWAIA NPGIADVIPL EPHYRIYRDC GIVFTERSRT KPEAQAFTRF LEGDEGRAIF
ERFGWMRRDT AVSAANEGS
|
|---|
| |