Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Noc_2350 |
Symbol | secD |
ID | 3704772 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Nitrosococcus oceani ATCC 19707 |
Kingdom | Bacteria |
Replicon accession | NC_007484 |
Strand | - |
Start bp | 2694015 |
End bp | 2695871 |
Gene Length | 1857 bp |
Protein Length | 618 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 637738833 |
Product | preprotein translocase subunit SecD |
Protein accession | YP_344338 |
Protein GI | 77165813 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0342] Preprotein translocase subunit SecD |
TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family [TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.951904 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACCGTT ATCCTCTTTG GAAAAACCTG CTCGTAGTGG CAGTAGTGCT TGTTGGTATC CTTTATGCTG TGCCCAATTT GTTTGGCGAT ACCCCAGCTT TGCAGATTTC GGCGACTCGT GGTGCGAGTC TCAAACCAGA GACTTTGGCC CGGGTGGAAC GGTTGCTCCA GGAGCAGGGT TTGGATTACC AATCGGTTCG CTTGGAAGAT CAGCGCCTCT TGGTCCGCCT TCGCCGCCTG GAAACTCAAC TCAAAGCTCA GGATGCTCTT AGGGCAGAAT TGGGTTCCGA CTATTCAATT GCCCTGCACT TGTCACCCGC TACCCCGGAT TGGTTGCGAG CTATTGGGGG ATTACCCATG AACTTGGGTT TGGACCTCCG TGGCGGCGTG CATTTTTTGA TGGAGGTAGA CATGGAAGCC GCGGTCCAGC AGGCTGAGGA GCGCTATGTG GAAGATCTGC GGTCCTTGTT GCGGGAAAAT AAAATACGTT ACCTCAGCAT TGGGCGATTG GGCGCAGGCG GAGTAGAGAT TAAATTTCGT AATGAACAAC AACGTGAGCA AGCGGAAACG CTCATCCACG ATGAGTATTT CGATTTGTTG TTAGAGCCGG CGGAGGGGGA GCGAGCCCCC CGTCTGGAAA TTAAGCTAAG CGAAAAGGAA CAACGGGAGA TCCAGCGCTT GGCTTTACAG CAAAATATTA CCACCTTACG TAATCGGATT AATGAACTCG GCGTGGCGGA ACCCACTATT CAGCAGCAAG GGGAGAACCG TATTGTAGTG CAGCTGCCGG GTGTTCAGGA TACGGCTCGG GCCAAGGAGA TTTTAGGGGC AACGGCAACC TTGGAATTTC GCCTGGTGGA TACAAGTCAC GACGTTCAGC GAGCAGTGGA AGGAAGAGTG CCAGTAGGCT CCCGCTTGTA TCATGAGCGT GGCGGAGCCC CTATCTTGCT AAAGAAGCGG GTAATATTGA CGGGTGATCA TGTTACAGAT GCGTCTTCGG GGATTGAGCA GCAAGGCGGT AGCCCAGCGG TGTTTGTCTC TCTGGATGGG CAAGGAGCCC GACATTTCAG TCAAGTAACG GGAGAGAATA TTGGCAAGCC CATGGCGGTG GTCTTTATAG AGACCAAGTC CGAGATCCGG ATGGAGGAGG GGGAGCCAGT CAAAGTTCGC CGCCGGGTAC CTGAGGTGAT CAATGTGGCC ACCATTCGGG ATCAACTCAG CAAACGTTTC CAGATCACGG GTCTCGATTC TACTGAGGAA GCCCGTAATT TAGCTTTGTT ATTGCGGGCA GGTGCATTAG CGGCGCCCAT TGATATCGTT GAGGAACGGA CCATCGGCCC AAGCTTGGGA CAGGATAATA TCGACAAGGG TTTTCAGTCT GTACTGATAG GTTTTGCCTT GGTGCTGGTG TTTATGGCTC TTTATTACCG GGTTTTTGGT CTCGTTGCCA ATTTGGCTCT GGCCGCCAAT CTGGTGCTGG TGGTTTCGCT TCTCTCTATG CTGCAAGCGA CTCTGACGTT GCCGGGTATT GCCGGTATCG TACTCACGGT AGGTATGGCA GTCGATGCTA ACGTATTGAT TTTTGAGCGT ATTCGCGAGG AACTTCGAAA TGGCAGCAGC CCTCAGGCGA GTATCGAGGC AGGTTATGCC AATGCCTTAT CCACTATTGT GGACGCTAAT ATCACTACCT TAATAACCGC GGTTGTCCTG TTTGGGTTTG GGACGGGCCC TATCAAGGGG TTTGCGGTTA CGTTATCCTT GGGTATTCTG ACTTCTATGT TTACCGCGAT TGTGGGGACC CGGGCCGTAA TTAATTTGAT TTATGGAAGG CGGCGTAAAG TAAAGTTGTC TATCTGA
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Protein sequence | MNRYPLWKNL LVVAVVLVGI LYAVPNLFGD TPALQISATR GASLKPETLA RVERLLQEQG LDYQSVRLED QRLLVRLRRL ETQLKAQDAL RAELGSDYSI ALHLSPATPD WLRAIGGLPM NLGLDLRGGV HFLMEVDMEA AVQQAEERYV EDLRSLLREN KIRYLSIGRL GAGGVEIKFR NEQQREQAET LIHDEYFDLL LEPAEGERAP RLEIKLSEKE QREIQRLALQ QNITTLRNRI NELGVAEPTI QQQGENRIVV QLPGVQDTAR AKEILGATAT LEFRLVDTSH DVQRAVEGRV PVGSRLYHER GGAPILLKKR VILTGDHVTD ASSGIEQQGG SPAVFVSLDG QGARHFSQVT GENIGKPMAV VFIETKSEIR MEEGEPVKVR RRVPEVINVA TIRDQLSKRF QITGLDSTEE ARNLALLLRA GALAAPIDIV EERTIGPSLG QDNIDKGFQS VLIGFALVLV FMALYYRVFG LVANLALAAN LVLVVSLLSM LQATLTLPGI AGIVLTVGMA VDANVLIFER IREELRNGSS PQASIEAGYA NALSTIVDAN ITTLITAVVL FGFGTGPIKG FAVTLSLGIL TSMFTAIVGT RAVINLIYGR RRKVKLSI
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