Gene Noc_2350 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_2350 
SymbolsecD 
ID3704772 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand
Start bp2694015 
End bp2695871 
Gene Length1857 bp 
Protein Length618 aa 
Translation table11 
GC content52% 
IMG OID637738833 
Productpreprotein translocase subunit SecD 
Protein accessionYP_344338 
Protein GI77165813 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0342] Preprotein translocase subunit SecD 
TIGRFAM ID[TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.951904 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCGTT ATCCTCTTTG GAAAAACCTG CTCGTAGTGG CAGTAGTGCT TGTTGGTATC 
CTTTATGCTG TGCCCAATTT GTTTGGCGAT ACCCCAGCTT TGCAGATTTC GGCGACTCGT
GGTGCGAGTC TCAAACCAGA GACTTTGGCC CGGGTGGAAC GGTTGCTCCA GGAGCAGGGT
TTGGATTACC AATCGGTTCG CTTGGAAGAT CAGCGCCTCT TGGTCCGCCT TCGCCGCCTG
GAAACTCAAC TCAAAGCTCA GGATGCTCTT AGGGCAGAAT TGGGTTCCGA CTATTCAATT
GCCCTGCACT TGTCACCCGC TACCCCGGAT TGGTTGCGAG CTATTGGGGG ATTACCCATG
AACTTGGGTT TGGACCTCCG TGGCGGCGTG CATTTTTTGA TGGAGGTAGA CATGGAAGCC
GCGGTCCAGC AGGCTGAGGA GCGCTATGTG GAAGATCTGC GGTCCTTGTT GCGGGAAAAT
AAAATACGTT ACCTCAGCAT TGGGCGATTG GGCGCAGGCG GAGTAGAGAT TAAATTTCGT
AATGAACAAC AACGTGAGCA AGCGGAAACG CTCATCCACG ATGAGTATTT CGATTTGTTG
TTAGAGCCGG CGGAGGGGGA GCGAGCCCCC CGTCTGGAAA TTAAGCTAAG CGAAAAGGAA
CAACGGGAGA TCCAGCGCTT GGCTTTACAG CAAAATATTA CCACCTTACG TAATCGGATT
AATGAACTCG GCGTGGCGGA ACCCACTATT CAGCAGCAAG GGGAGAACCG TATTGTAGTG
CAGCTGCCGG GTGTTCAGGA TACGGCTCGG GCCAAGGAGA TTTTAGGGGC AACGGCAACC
TTGGAATTTC GCCTGGTGGA TACAAGTCAC GACGTTCAGC GAGCAGTGGA AGGAAGAGTG
CCAGTAGGCT CCCGCTTGTA TCATGAGCGT GGCGGAGCCC CTATCTTGCT AAAGAAGCGG
GTAATATTGA CGGGTGATCA TGTTACAGAT GCGTCTTCGG GGATTGAGCA GCAAGGCGGT
AGCCCAGCGG TGTTTGTCTC TCTGGATGGG CAAGGAGCCC GACATTTCAG TCAAGTAACG
GGAGAGAATA TTGGCAAGCC CATGGCGGTG GTCTTTATAG AGACCAAGTC CGAGATCCGG
ATGGAGGAGG GGGAGCCAGT CAAAGTTCGC CGCCGGGTAC CTGAGGTGAT CAATGTGGCC
ACCATTCGGG ATCAACTCAG CAAACGTTTC CAGATCACGG GTCTCGATTC TACTGAGGAA
GCCCGTAATT TAGCTTTGTT ATTGCGGGCA GGTGCATTAG CGGCGCCCAT TGATATCGTT
GAGGAACGGA CCATCGGCCC AAGCTTGGGA CAGGATAATA TCGACAAGGG TTTTCAGTCT
GTACTGATAG GTTTTGCCTT GGTGCTGGTG TTTATGGCTC TTTATTACCG GGTTTTTGGT
CTCGTTGCCA ATTTGGCTCT GGCCGCCAAT CTGGTGCTGG TGGTTTCGCT TCTCTCTATG
CTGCAAGCGA CTCTGACGTT GCCGGGTATT GCCGGTATCG TACTCACGGT AGGTATGGCA
GTCGATGCTA ACGTATTGAT TTTTGAGCGT ATTCGCGAGG AACTTCGAAA TGGCAGCAGC
CCTCAGGCGA GTATCGAGGC AGGTTATGCC AATGCCTTAT CCACTATTGT GGACGCTAAT
ATCACTACCT TAATAACCGC GGTTGTCCTG TTTGGGTTTG GGACGGGCCC TATCAAGGGG
TTTGCGGTTA CGTTATCCTT GGGTATTCTG ACTTCTATGT TTACCGCGAT TGTGGGGACC
CGGGCCGTAA TTAATTTGAT TTATGGAAGG CGGCGTAAAG TAAAGTTGTC TATCTGA
 
Protein sequence
MNRYPLWKNL LVVAVVLVGI LYAVPNLFGD TPALQISATR GASLKPETLA RVERLLQEQG 
LDYQSVRLED QRLLVRLRRL ETQLKAQDAL RAELGSDYSI ALHLSPATPD WLRAIGGLPM
NLGLDLRGGV HFLMEVDMEA AVQQAEERYV EDLRSLLREN KIRYLSIGRL GAGGVEIKFR
NEQQREQAET LIHDEYFDLL LEPAEGERAP RLEIKLSEKE QREIQRLALQ QNITTLRNRI
NELGVAEPTI QQQGENRIVV QLPGVQDTAR AKEILGATAT LEFRLVDTSH DVQRAVEGRV
PVGSRLYHER GGAPILLKKR VILTGDHVTD ASSGIEQQGG SPAVFVSLDG QGARHFSQVT
GENIGKPMAV VFIETKSEIR MEEGEPVKVR RRVPEVINVA TIRDQLSKRF QITGLDSTEE
ARNLALLLRA GALAAPIDIV EERTIGPSLG QDNIDKGFQS VLIGFALVLV FMALYYRVFG
LVANLALAAN LVLVVSLLSM LQATLTLPGI AGIVLTVGMA VDANVLIFER IREELRNGSS
PQASIEAGYA NALSTIVDAN ITTLITAVVL FGFGTGPIKG FAVTLSLGIL TSMFTAIVGT
RAVINLIYGR RRKVKLSI