| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1978 |
|---|
| Symbol | |
|---|
| ID | 3705437 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | - |
|---|
| Start bp | 2271786 |
|---|
| End bp | 2273318 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637738454 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_343970 |
|---|
| Protein GI | 77165445 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR02602] eight transmembrane protein EpsH (proposed exosortase)
[TIGR02914] EpsI family protein
[TIGR03109] exosortase 1 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGCTAAGTT GGCCTCTGGC AACGGTGGCA ATAGCTGTGG TGTTGCTTGC CCTATTCCTG
TTTTATCTGG AAACCGCAGT ATCCATGGCG GCTATTTGGT GGCGTTCTGC GACCTTTGCC
CATGGTATGC TCATTTTTCC GGTTAGCGGT TATATGATCT GGGCGCGACG GTGGCAGCTC
CAGCAGCTTC AACCCCATCC TCGGCCACTA GCCGCATTCT TTATTCTGCT ATTATCCGGG
GGATGGTTAC TGGCTAGGAT TGCGGACGTG CTATTTGTCG AACAATTGTT ATTGGTGGCC
ATGATTCCGG TAGTGGTGTG GGGGTTATTG GGAAAGAGGG TCGTTCGCGC GTTGGCGTTT
CCACTTGTCT ACTTGGTTTT TGCGGTACCG TTTGGTGAAT TTTTAATTCC GCCGCTGCAA
GATTTTACAG CCGCTTTTGC TGTCAAAAGC CTGCAATTCG GTGGAGTGCC GGTTTACTGG
GAAGGGCGTT ATATTAGTAT TCCCTCGGGG GATTTTCTGG TTGCGGAAGC TTGTAGCGGG
CTGCGTTACC TTATTACTTC GGTTGTTCTT GGCACCCTCT ACGCTTATCT TACTTATTCT
AGTTATGGGC GCCGCGCGGC ATTTATTGTG GCTTCGGTTA TCGTACCTAT TATTGCTAAT
GGTATCCGGG CCTACGGCGT TATTATGCTG GCTTACCTCA GTAATATGAA GTTGGCGACC
GGCGTGGACC ATGTTGTTTA CGGGTGGATT TTCTTTGGCG TAGTCATGTC GTTACTCTTT
TGGCTGGGAT CGTTCTGGCG CGAGGATAAG TGCCCCGGCA ACAGGGCCTC GTTGTCTCGG
CAATCTGGAG GGATTGTCGC CCAGCAGGCC CCCCGTGCAA AAAAACTGGG TGTAACTACT
ATTATACTGA TCCTGGTGGC CGGTGCCGGT CCCGCGAGTG GAATTTGGTT TAAAGGCCAA
GCATCGAAAA CCGACTGTTC GGTGTCTATG CCTAAGGAGC AGCCGGTCTG GAGTGGTTCT
TCCGTCCCGA CCAGTATGTG GGAGCCAGAT TATTCCCAAG CAGATCAAAT CGTGCGCCGT
CTCTATTCAT TCCCAGATGA TAGTGCGGTA CAGCTTTTAA TTATCTATTA TCAGCAAGAG
CATCAAGGAG CTGAACTTAT TAGTTCTCAA AATCGCCTCT ATGATGATCA AATTTGGCGT
TGGATGGAAG ATAATCGCCG AAGCCTCTCC CTTGGTGATG ATCATCTCCA AGTGCATGAA
ACTGTTATCC GTTCCCCTAA TACGCTGCGC GTCATTTGGC ACTGGTATGA TATTGCTGGC
CAGCGAACGG CTAGTCCGAT AAAAGCTAAA TTTCTTGAAG CCTGGGCTCA TCTTACCAAG
CAGCCAAGCG GCTCCACGCT CATCGCTGTA GCTGCGGATA GCGGTAAGCC GGAGCAAGCC
CGTGCGCTCC TGCTAAAATT TTTGAATGAG ATGCCGGCAG TCTCTACCTC AGGCGCAATG
CTAGCTTGCC AGTCAGTATC AGAGAGAACA TAA
|
|---|
| Protein sequence | MLSWPLATVA IAVVLLALFL FYLETAVSMA AIWWRSATFA HGMLIFPVSG YMIWARRWQL
QQLQPHPRPL AAFFILLLSG GWLLARIADV LFVEQLLLVA MIPVVVWGLL GKRVVRALAF
PLVYLVFAVP FGEFLIPPLQ DFTAAFAVKS LQFGGVPVYW EGRYISIPSG DFLVAEACSG
LRYLITSVVL GTLYAYLTYS SYGRRAAFIV ASVIVPIIAN GIRAYGVIML AYLSNMKLAT
GVDHVVYGWI FFGVVMSLLF WLGSFWREDK CPGNRASLSR QSGGIVAQQA PRAKKLGVTT
IILILVAGAG PASGIWFKGQ ASKTDCSVSM PKEQPVWSGS SVPTSMWEPD YSQADQIVRR
LYSFPDDSAV QLLIIYYQQE HQGAELISSQ NRLYDDQIWR WMEDNRRSLS LGDDHLQVHE
TVIRSPNTLR VIWHWYDIAG QRTASPIKAK FLEAWAHLTK QPSGSTLIAV AADSGKPEQA
RALLLKFLNE MPAVSTSGAM LACQSVSERT
|
|---|
| |