| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1826 |
|---|
| Symbol | |
|---|
| ID | 3705266 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | - |
|---|
| Start bp | 2071070 |
|---|
| End bp | 2073088 |
|---|
| Gene Length | 2019 bp |
|---|
| Protein Length | 672 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 637738307 |
|---|
| Product | glycogen debranching protein |
|---|
| Protein accession | YP_343824 |
|---|
| Protein GI | 77165299 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3408] Glycogen debranching enzyme |
|---|
| TIGRFAM ID | [TIGR01561] glycogen debranching enzyme, archaeal type, putative |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0277805 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTGA CTCTTCCCCC TCCTATCCGC TTTGGCCGGG AAATCTGCGG CGACCTTGCA
CAGGGAGAAC GGCGTGAGTG GTGGCTGACC AATAGCCTTG GCGGTTACGC TGCCGGCACG
GTGGCGGGAA CCCTGACGCG GCGCTACCAT GGTTTGCTGA TTGCCCCCCT AACACCACCC
CTAGGACGTT TTCTGGTTTT CGCCAAGGCT GAGGCAAGTT TACTTTACCA GGACCAGGTA
ATCCCCCTAT TTACTAACCG CTGGGCAAGT GGCGCAGTCG ATCCAAGGGG TTATGTCCAT
TTGGAATCCT TTGAGCTTCA AGGCCGGATG CCAGTTTGGC GTTTTGCCGT GGGTGATCTA
GCCCTGGAAG CGCGCCTCTG GCTGGAACCA GATGCCCACA CTACTTACTT GGCCTATCGG
TTGGTAAATC CATCGTCTTC CTCTTCCTCT GGGGGCTCGG TTCGCCTTCG CCTCAAGCTG
CTGGTGAATG CCCGGGATCA CCACGGTACC GCCTCGCCTG GAGCGTTGAG CCCAGTGATG
GAAGGGGAGG CGGATCGGCT GCGGGTGATT CACCCCCACT GGTTCAGTTT GTATTTTCGT
GCTCAAGGAG GTTCCATAAC CAGAGAGTCC TCCTGGATTG AAGATTTTGA TCTTTCCCTG
GAACGGGAGC GGGGCCTGCC GGATCGTGAT CGCCATCTTT GTGTGGGGCA AGCTGAACTG
AGTCTGTCTT GGAAAGGTTG GGTAGGCATG GTAGCCAGTC TCCAGCCAGA GACTTCTTCC
CTGGAAGAAG CCATGGAGCG TTTTCAGGCT CATGAATTAA AGGTGTTAAG GCGGGCTAGC
ACCGGCGTTA AAGAGGAATT TAAAGCGCCC TCCTGGATTC GGCGGTTAGT GCTAGCGGCG
GATAGCTTTC TTTTTGCCCG CCCTCTCCCT AACCACCCGA AGGGGGAATC GGTCATCGCC
GGTTATCCCT GGTTTGGGGA TTGGGGCCGG GATACCATGA TCGCCTTGCC GGGACTGACC
CTGGTGACGG GTCGCTTTGA GAGCGCCCGC CGGATTTTGG AGACCTTTGC CGAGTTTATC
GACCAAGGAC TATTGCCGAA TTGGTTTCCA GGCAAAGGCG AGACGCCGGA ATATAATAGC
GCCGATGGTG CCCTTTGGTT TATTGAAGCC TGGCGGGCTT ATGTGGCGGC CACGGATGAC
CGAATGGCGC TCAAGCGCTG GTTTGGGGTG CTCGAAGAAA TTGTGCGGAA ATACCAACAA
GGGACTCGCC ATGGCATTGG CATGGACCTG GCGGATGGGT TGATTGCTAT CAGGGCACCA
GGATTGCAGC TTACCTGGAT GGATGCCAAG GTGGGTGAAT GGGTGGTCAC GCCCCGCCAG
GGCAAGCCAG TGGAGATCAA TGCCTTGTGG TTCAATGCCT TGTGGGCCCT GGCCTCCTTG
GCGGAAGCAC TGGGCCAGTC CGATTTACCT TACCGGGACT TGGCTAGGAA GACCCAGCGG
GGCTTCCAAC GTTTTATAAG GCCGGAAGGG GAGGGTTTAT TCGATGTCAT CGATGGACCT
GAAGGAGCGG ATAGGGCCGT CCGGCCCAAT CAGATTTTGG CGGTGAGTTT GCCCCACAGT
CCCCTTGATG CCACCGCCCA GGCTGGGATA GTGCGCCAGT GTGGACGGGA GTTGCTGTGC
TCCTATGGAC TGCGTTCCCT CTCTCCCGCC CACCCGGCTT ATCAGCCCCA CTATCAGGGG
GATGTTTGGG CCCGGGATGG GGCTTATCAC CAGGGGACGG TATGGGCCTG GCTGTTGGGC
CATTACGCCC TGGCCCACTA TCGAGTCCAT GGGGATGGAG CAGCGGCCCA GAATCTGCTT
GCGCCTGTGG GGGATCACCT TCTGGACGCT GGCCTTGGCA CGGTGAGCGA AATTTTCGAT
GGAGCGCCTC CCCATCGGCC CCGGGGGGCG CCCGCTCAAG CCTGGTCGGT AGCCTGTGTA
CTCCAAGCCT GGTGGCAGCT TGAACAGACT AAAGATTAA
|
|---|
| Protein sequence | MTLTLPPPIR FGREICGDLA QGERREWWLT NSLGGYAAGT VAGTLTRRYH GLLIAPLTPP
LGRFLVFAKA EASLLYQDQV IPLFTNRWAS GAVDPRGYVH LESFELQGRM PVWRFAVGDL
ALEARLWLEP DAHTTYLAYR LVNPSSSSSS GGSVRLRLKL LVNARDHHGT ASPGALSPVM
EGEADRLRVI HPHWFSLYFR AQGGSITRES SWIEDFDLSL ERERGLPDRD RHLCVGQAEL
SLSWKGWVGM VASLQPETSS LEEAMERFQA HELKVLRRAS TGVKEEFKAP SWIRRLVLAA
DSFLFARPLP NHPKGESVIA GYPWFGDWGR DTMIALPGLT LVTGRFESAR RILETFAEFI
DQGLLPNWFP GKGETPEYNS ADGALWFIEA WRAYVAATDD RMALKRWFGV LEEIVRKYQQ
GTRHGIGMDL ADGLIAIRAP GLQLTWMDAK VGEWVVTPRQ GKPVEINALW FNALWALASL
AEALGQSDLP YRDLARKTQR GFQRFIRPEG EGLFDVIDGP EGADRAVRPN QILAVSLPHS
PLDATAQAGI VRQCGRELLC SYGLRSLSPA HPAYQPHYQG DVWARDGAYH QGTVWAWLLG
HYALAHYRVH GDGAAAQNLL APVGDHLLDA GLGTVSEIFD GAPPHRPRGA PAQAWSVACV
LQAWWQLEQT KD
|
|---|
| |