| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1493 |
|---|
| Symbol | |
|---|
| ID | 3705984 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | + |
|---|
| Start bp | 1653266 |
|---|
| End bp | 1655080 |
|---|
| Gene Length | 1815 bp |
|---|
| Protein Length | 604 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637737980 |
|---|
| Product | peptidase M61 |
|---|
| Protein accession | YP_343509 |
|---|
| Protein GI | 77164984 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.333369 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTTA TTCATTATCG CATTATTCCC AAAAATCCCC AGGCCCACCT GTTCCAGGTG
ACGCTTACTA TTTTAGAGCC TGCTCCCGAA GGCCAGTGTT TGTCGCTACC GGCATGGATT
CCTGGGAGCT ATTTGATCCG CGATTTTGCC AAGCACGTGG TCCAGCTTAG GGCCGAATCC
CAAGGGCATC CCCTTCCCGT CGAAAAATTG AGCAAATCTC TCTGGCAATG CGCGCCGAGC
GGGGGGCCAG TGACAATTAA CTATGAGGTC TATGCCTGGG ACAGCTCTGT GCGGGCCGCC
CATCTGGACA CCTTCCATGG TTTTTTCAAC GGAACCAGCG TTTTTCTGCG GGTAGAAGGG
CAGGCTCATG AACCCTGCAC CGTCACCCTT TTACCGCCAG AGGGGGAAAC TTACCGCCAC
TGGCGGGTGG CTACCGCTTT ACCTCGGGCT GGCGCCGAGC CGTATGGTTT TGGCGACTAT
CAGGCGGGGG ACTATGAGGA ACTGGTTGAT CATCCCGTGG AAATGGGTGA GTTTAGCCTG
GTTACCTTCG AGGCTTGCGG CGTTCCCCAC GATATCGCCA TCACCGGCCG TCATCGGGCT
GATATGGAAC GTCTGAGCCG GGATCTGAAG ATCTTATGCG AGCACCATAT CCGCTTCTTC
GGTGAACCAG CGCCTATGGA TCGGTATGTC TTTTTGGTGA CCGCCGTGGG CGAAGGATAT
GGGGGACTGG AACATCGAGC TTCGTGTGCT TTGTTATGCA ATCGGAGCGA CTTGCCCCAA
GCAGGAGAAA CCGAAGTTGG GGAAGGTTAC CGGAATTTTC TTGGCCTATG CAGTCATGAA
TATTTCCATA CCTGGAATAT CAAGCGTATC AAGCCCGCCG CTTTTGTCCC TTACGATCTT
CAGCAAGAGA ATTACACCCG CCTGCTTTGG GCTTTTGAAG GGATTACCTC CTATTATGAC
GATCTGGGGC TGGTGCGCTC GGGGCTGATT AGCCAAGAGA GTTATTTGGA GTTGCTGGGA
CAGACCATCA CCCGGGTGTT GCGAGGCTCG GGCCGGCTTA AGCAAAATCT AGCCGAATCC
AGCTTTGATG CCTGGACGAA ATTTTACCAG CAGGATGAAA ATGCTCCCAA TGCTATCGTG
AGTTACTATA CCAAGGGTGC ATTGGTAGCC CTGGCGCTGG ATCTAACCCT GCGGTGGGAA
ACCCACGGCG AGTGTTCCTT GGATGGGGTG ATGCGGGCAT TATGGGAAAG TTATGGTAAG
ACGGGGGTAG GCGTGCCTGA AGACGGGGTA GAACGTCAGG TTGCCGAGGT TTCAGGATTG
GATATAACGG ATTTCTTTGA AGTAGCGCTG CGGCGGGCGG AGGATCTTCC CTTGCAAGCG
CTGTTGGCCC AGGTAGGGAT TTGCTATGCC CTGCGCGTCC CGGAATCCAG TGATGATAAA
GGCGGCAAGC CTGGCAAAGG GGGCACGCCT CGCGCTAGGC TAGGCATCCG CTTGGTTCCG
AATGAAAAAG AGGCCAGGAT CAGCCAAGTC TTCGATGAGA GCGCGGCTCA ATGGGCCGGG
CTCTCAGCCG GGGATAGCCT CATTGCCGTA GATGGTATCA GGGTGACCGC CAGCAATTTG
GAGAAAGTCA TTAGCTCTTA TCCAGGAGGA GCGAGAGTTA TCATCCATGC TTTTCGGCGG
GATGAATTGC GGGAGTTTGA GGCTGCTTTG CAACTGCCTC CCAAGGATAC CTGCGTGCTG
ACTATTGATG AAGACGCCTC CCCAACCGCT GTAGTGGCCC GGGAGGCTTG GTTATTGGAG
TTTCGCCATG ACTGA
|
|---|
| Protein sequence | MSFIHYRIIP KNPQAHLFQV TLTILEPAPE GQCLSLPAWI PGSYLIRDFA KHVVQLRAES
QGHPLPVEKL SKSLWQCAPS GGPVTINYEV YAWDSSVRAA HLDTFHGFFN GTSVFLRVEG
QAHEPCTVTL LPPEGETYRH WRVATALPRA GAEPYGFGDY QAGDYEELVD HPVEMGEFSL
VTFEACGVPH DIAITGRHRA DMERLSRDLK ILCEHHIRFF GEPAPMDRYV FLVTAVGEGY
GGLEHRASCA LLCNRSDLPQ AGETEVGEGY RNFLGLCSHE YFHTWNIKRI KPAAFVPYDL
QQENYTRLLW AFEGITSYYD DLGLVRSGLI SQESYLELLG QTITRVLRGS GRLKQNLAES
SFDAWTKFYQ QDENAPNAIV SYYTKGALVA LALDLTLRWE THGECSLDGV MRALWESYGK
TGVGVPEDGV ERQVAEVSGL DITDFFEVAL RRAEDLPLQA LLAQVGICYA LRVPESSDDK
GGKPGKGGTP RARLGIRLVP NEKEARISQV FDESAAQWAG LSAGDSLIAV DGIRVTASNL
EKVISSYPGG ARVIIHAFRR DELREFEAAL QLPPKDTCVL TIDEDASPTA VVAREAWLLE
FRHD
|
|---|
| |