| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_1276 |
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| Symbol | |
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| ID | 3706349 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Nitrosococcus oceani ATCC 19707 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007484 |
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| Strand | - |
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| Start bp | 1413676 |
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| End bp | 1415337 |
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| Gene Length | 1662 bp |
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| Protein Length | 553 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 637737777 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_343306 |
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| Protein GI | 77164781 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGAGA ACTTGCATCG TAAAAAATCC TGGCGCGGAA GCGCCCTGCT GATCGTCGTT
ATCGTGGTTG TTGTCGGGCT TTATTTAGGC TACCGAGCCT ACGAAAGCAA GCACAACGCC
ACCGCAATAC GGGAGGAAAC GCTGGAGAGG GCTATTCCAG CGGTAACGGT CCTATACCCC
AGGGAGTTGG AGGCAAATCG GAGCATTGAC CTTCCCGGGA ATTTCGTGGC CTGGCATCAA
GCGCCCATCT ACGCACGGGT ATCGGGCTAT GTGGACATGT GGTACTCAGA CTACGGCGCC
AAGGTAAAAA AAGGCGATCT TCTCGCCGAG CTCAACACGC CTATGATCAA CGCTGAATAT
AGAATGGCCC AGGCGCAAGT CGTGGCTAAA GAGGCTGAAT ATAAACTTGC CGTGGTAACC
AAGGGCCGCT GGGTAAATTT AGGCGATACC AAAGCGGTTT CCACACAGTC GGTCTCGGTG
AAAACAGCCA ATGAAAGAGT GAAAAATGCG GAACTCAACA AGGCGAAACA AGAACTTAAA
AACATCGAGG CGAAGAGAAG CTTCAGACAC ATCATCGCCC CCTTCGATGG GGTGGTGATA
GAGCGTAACG TTAATGTCGG TGATTACGTC AATGAGACGG GCAGCCTTAG CCTGAAAGGA
GCAGAAGAAG CCAATATGTT CACCGTAGCC GACACCAGTA AGATGCGCCT TTTTGTCAGC
GTGCCGGAAT CGTTCGGACC CTTTCTCAAG CCCGGTCTGA CAGCCGAGGT CACTGTGCCC
CAGTTCCCTA AGCGCCGTTT CACCGCCCAT TTCCTGACCG TCGCCGGGGG ATTTGATGTG
AGCACGCGGA CCGCGGTGAC CGAATTTGTA ATCGAAAATG AGGATGGGGT GCTCTGGCCT
GGCTCCTACG CCTCGGTCCA TATCACGGCG CCGGTTGAGC GCGGCGCGGT TTCGATTCCG
ACTACTTCCT TGGTGTTTGA GGAAGAGGGG GCGACTGCGG CCCTAGTAAC CGCGGATAAC
CGTATTCACT TCAAGCCGAT TGAAGTGAGA AGAATTCGCG CCAGGACTCT GGAAGTGGCG
GGTATCTCCA CAACCGACCG CATCGTGGAC AATCCAAGCG CCGCCTTGCT CGAAGGAGAC
CAGGTGCGCA TCATTGATAA GCCAGCGAAA GGGTATATAA AATCGCCCTA TGAAGCGACC
GAATCTGATT TACCGGCCCA GAAGACGACC AGTAAAACTC CCTCTGAATC CGGCGCGCAG
CCGCCTCAAG AGGCGGCAGG TAAAAAACAC ACTGATAATA ACCGCACGTT GCCTTACAGG
GCGGGCCCCT ATCAATTCGA TGTCACCCTA GAGCCTAAAA AACCCGTGGT GGGCAAAAAT
ATATTGGTGA TTTACCTTCG AGATCAGCAG GGACAACCTA TCCGGAATGC TGAAGTTGAT
GCGGTTGCTA AAATATCGGC AGAGGGCTCC CAATCGGCAA GGGAGATTCC AGCCAAGGTG
AGAGAGGTGA AACCCGGTAT TTACGGTGGA TCGCTTGACT TACCTAGGGT AGGCGATTGG
TCGTTAACGC TCTGGTTCGA AGCGGCCGAC ACCCCCAAGC AGAAGGCAGT GCTGAATATG
GCCACCGGCC ACGGCGAGTT GGCTATGAGA GACAATCCTT AG
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| Protein sequence | MNENLHRKKS WRGSALLIVV IVVVVGLYLG YRAYESKHNA TAIREETLER AIPAVTVLYP
RELEANRSID LPGNFVAWHQ APIYARVSGY VDMWYSDYGA KVKKGDLLAE LNTPMINAEY
RMAQAQVVAK EAEYKLAVVT KGRWVNLGDT KAVSTQSVSV KTANERVKNA ELNKAKQELK
NIEAKRSFRH IIAPFDGVVI ERNVNVGDYV NETGSLSLKG AEEANMFTVA DTSKMRLFVS
VPESFGPFLK PGLTAEVTVP QFPKRRFTAH FLTVAGGFDV STRTAVTEFV IENEDGVLWP
GSYASVHITA PVERGAVSIP TTSLVFEEEG ATAALVTADN RIHFKPIEVR RIRARTLEVA
GISTTDRIVD NPSAALLEGD QVRIIDKPAK GYIKSPYEAT ESDLPAQKTT SKTPSESGAQ
PPQEAAGKKH TDNNRTLPYR AGPYQFDVTL EPKKPVVGKN ILVIYLRDQQ GQPIRNAEVD
AVAKISAEGS QSAREIPAKV REVKPGIYGG SLDLPRVGDW SLTLWFEAAD TPKQKAVLNM
ATGHGELAMR DNP
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