Gene Noc_0923 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagNoc_0923 
Symbol 
ID3707313 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameNitrosococcus oceani ATCC 19707 
KingdomBacteria 
Replicon accessionNC_007484 
Strand+ 
Start bp1019107 
End bp1019640 
Gene Length534 bp 
Protein Length177 aa 
Translation table11 
GC content55% 
IMG OID637737431 
Product2',5' RNA ligase 
Protein accessionYP_342965 
Protein GI77164440 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGAACCGCC CACCTGAAAC GCAACGTTTA TTTTTTGCCC TCTGGCCAGG AGCCGAGATT 
CGAGAGCAGG CGACTCAGAT TGCCCAGCGG ATGCTGGGGA AGCGGGGCAA ATGCGTCCGC 
TCTGAGAATC TGCACTTGAC TTTAGTTTTC TTGGGGAGTA CGACGGAACA GCAGCGAGCC 
TGTGCTGAAG CGGTAGCTGA TACTATTGAG GGCACGGCAT TTGCGCTACG GCTAGAGCAG 
ATAGGGTATT GGTCTCGGCC ACGAGTCGTT TGGCTTGCTC CTCGGGAGAC ACCTCAGCCT 
TTGATAGAAC TAGTGCAGCA ATTAAACCAG GGGTTGACGG CGTGCGGTTA TCAGCCCGAA 
GCTCGGCCTT ATCGGGCCCA CATGACCTTG GCCCGTAAAG TTGCTGGGTA CTTTCCGGCC 
CGTGAGGTAG CACCTCTAGC TTGCCCGGTT GAGCACTTTT ATTTGGTGCG GTCAGTGAGC 
TATCCTGGCG GGGTAGAGTA TCAAGTATTG CGTAGTTGGC CTTTAGCCCA ATAA
 
Protein sequence
MNRPPETQRL FFALWPGAEI REQATQIAQR MLGKRGKCVR SENLHLTLVF LGSTTEQQRA 
CAEAVADTIE GTAFALRLEQ IGYWSRPRVV WLAPRETPQP LIELVQQLNQ GLTACGYQPE 
ARPYRAHMTL ARKVAGYFPA REVAPLACPV EHFYLVRSVS YPGGVEYQVL RSWPLAQ