| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0611 |
|---|
| Symbol | |
|---|
| ID | 3706843 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | + |
|---|
| Start bp | 656756 |
|---|
| End bp | 658042 |
|---|
| Gene Length | 1287 bp |
|---|
| Protein Length | 428 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 637737119 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_342660 |
|---|
| Protein GI | 77164135 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4783] Putative Zn-dependent protease, contains TPR repeats |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.0000267471 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGAAGGTT TTTTTCAGTG CTTAAGAGGG CACGGCCGTA CGCTTGTGGG AATATGGGCT
AGGCGGTTAC CGCTTTTTAT GCTAGCAAAG GTATTGCTCT TAGGGGGAGG ATTATTGGTG
AATGCCCAAG CGGCTGAGCA GTACCTTCTG ACCCCTTCTA CCTATGAATC CCTGAGCGCT
GTCCATAAGC TCATGGACAA GCAGCAGTAT ACATCTGCCC TTAAACAACT CACCGCACTA
CAAGACGAGG TGAATGGTAA GGCTTACGAG CAGGCGGTTG TGCTCCAAAC CCTCGGCTAT
GTGTATTCTT CTTTAGAAAA ATATCCCAAG GCGATCCAGG CATTTAAAGC TAGCCTAGCC
CTAGATGCGC TGCCTGCCCG GGTCACTCAT GATTTGCGTT ATGGTCTGGC GCAGCTTTAC
ATGGCTACGG AGCAGTATGG AAAAGCTCTC CAGTTGCTAG AGGCATGGTT TAAGGCTGCG
GAATCTCCCC CGGCGGAAGC CCATGTATTG GCTGCTAGTG CCTACTACCA TCTGAAGCGG
TATGCCGAAG TCATTCCTCA TATTGAGGTA GCCATTGAGC TTGCCCAAGC GCCGCAAGAG
GAGTGGTATC AACTGCACCT TGCCGCCCGT TTAGAGTTGA AGCAATATTC CCAGGCGGCC
CAAATATTAG AAACCTTGAT AGGCCACTTC CCTAACAAGG AGCAGTATTG GAAGCAGCTG
GGAGCGGTGT ACATGGAGAT GAATAAAGAG CATCGGGCCT TAGCCGTGGA AGCGCTAGTA
GCACATATGG AGCCTCTTGA TAGTAAAAGC CTCATTCACC TTGCTAATCT TTATCGTTAC
CTCCATATTC CCTATAAAGC CGCGCAAGTT TTGCAGCAGG GTTTAAGGGA TGAAACTATT
CAAACAAGCA GCAAGCATTG GGAATTTCTT GCCGATGCCT GGCTCGCCGC CCGGGAATGG
GAACGCGCCG CTGCTGCTTT TAAGGAGGCA GGGCGGTTGA GGCAGGATGG CAAAATGGCC
CTTCGCCGCG GTCAGGTTCT CATCGAGCTG CAAGACTGGA AGCAAGCAGA GAAAGCCTTT
GCGCAAAGTT TGCGCAAAGG GGGACTGGAT GATCCTGGGC AAGCCCGTTT TTTCTTGAGT
CAGGCGAGAT ATGAGCAGGG GCACTTTGCA GAAGCTATTC AGGCGTTAAA GTTAATTCAG
GCTTCCTCAG CTTATAGCAA ACAGGCCGCC CAATGGTTAA AGCATTTACA GGTAGTCCGG
AAGCAGGGAG CTGACGGCAA AGGTTAA
|
|---|
| Protein sequence | MEGFFQCLRG HGRTLVGIWA RRLPLFMLAK VLLLGGGLLV NAQAAEQYLL TPSTYESLSA
VHKLMDKQQY TSALKQLTAL QDEVNGKAYE QAVVLQTLGY VYSSLEKYPK AIQAFKASLA
LDALPARVTH DLRYGLAQLY MATEQYGKAL QLLEAWFKAA ESPPAEAHVL AASAYYHLKR
YAEVIPHIEV AIELAQAPQE EWYQLHLAAR LELKQYSQAA QILETLIGHF PNKEQYWKQL
GAVYMEMNKE HRALAVEALV AHMEPLDSKS LIHLANLYRY LHIPYKAAQV LQQGLRDETI
QTSSKHWEFL ADAWLAAREW ERAAAAFKEA GRLRQDGKMA LRRGQVLIEL QDWKQAEKAF
AQSLRKGGLD DPGQARFFLS QARYEQGHFA EAIQALKLIQ ASSAYSKQAA QWLKHLQVVR
KQGADGKG
|
|---|
| |