| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Noc_0352 |
|---|
| Symbol | |
|---|
| ID | 3706523 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Nitrosococcus oceani ATCC 19707 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007484 |
|---|
| Strand | - |
|---|
| Start bp | 385675 |
|---|
| End bp | 387084 |
|---|
| Gene Length | 1410 bp |
|---|
| Protein Length | 469 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 637736864 |
|---|
| Product | D-lactate dehydrogenase (cytochrome) |
|---|
| Protein accession | YP_342408 |
|---|
| Protein GI | 77163883 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0277] FAD/FMN-containing dehydrogenases |
|---|
| TIGRFAM ID | [TIGR00387] glycolate oxidase, subunit GlcD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAACAATA GCGCTCCGAC AGCCACGCCG GAATTTCTGG CGGCCCTTAT CCAAATCGTA
GGCGAACAAC GGGTTCGTTC CGATCCAGCC GACTGCTGGC CCTATGGCTA TGACAATAGC
CGTCGGCATG CCTTGCCCGA ATGGGTCGTG TTCGCCCTCA CCCACGAAGA AGTTCGCGAC
CTTGTCCGTC TCTGTAATAA GGCTCGCGTC CCCATTGTTC CCCGTGGACG AGGGACCGGA
ACTACTGGCG CAACAGTGCC GATTAGTGGC GGTCTAGTGC TTTCCCTAGA GCGTATGAAC
CGCATCCGCA TGCTTGATCC CACTAACCGG GCAATGGTGG TAGAACCAGG CGTGACCAAT
CAAGAAGTTC AAATAGCAGC TGGCCAGCAG GGATTTTTCT GGCCTCCAGA CCCCACCAGC
GCTGCTTTCT GCACCCTTGG CGGCAACCTC GCCTATAATT CTGCCGGCCC GCGCGCGGTA
AAATATGGCA CTCCCCGGGA AAATGTGCTG GCTCTTCGGG CCGTCACCGG CGCCGGAGAA
GAGTTCCGCT GCGGCACCTA TACCACTAAA GGGGTTGTCG GCTACGATCT TACCCGGCTA
CTTATCGGCT CGGAGGGAAC CCTCGCGATT ATTACCGAAG CAACCCTTAG ATTAACGCCC
TTACCCGAAG CCAAACGAAC CCTCCGTGCC GCCTATAAGG ATACGGAAAG CGCGGGTCAG
GCGGTAGCCG ATCTAATGAG CCAACCCCTC ACCCCTTGCG CCCTAGAATT GATGGACCGC
CAGGCGGTAA CCCTGGTGCA AGCACAAGGT GGGATCGAAT TACCTCCGGG GACGGGGGCG
TTACTCATGA TAGAGGTGGA TGGCCCGGCC ACGGCAATGG AAGACGCCGT TACTCAACTC
AAAAAAGCAG CTCATAATGC AGGGCTTCTG GAAATTGTTG CGGCGCGTAC CCCCCAAGAA
AGTAAACAGT TATGGGCAGC CCGCAAGGCT CTTTCGCCTG CCCTGCGCAC TCTGGCCCCC
AAAAAAATTA ATGAGGACGT GGTAGTTCCC GTCTCCCATT TACCTGCACT CATTAGCGGC
CTTGAAAGGC TAGCAAAAGA ATTTGCCATC ACGATTGTCA ATTTTGGTCA TGCAGGTAAT
GGTAATCTCC ACGTCAATCT ATTGACCGAT CCGGATGAGC CTACCGAAAG GGAGCGTACG
AAAAAATGCC TAGAGCAGGT TTTTAAACTG GTTTTAAGCC TCAAAGGCTC CCTTTCCGGG
GAACACGGAG TAGGATTAGA GAAGCGCGAT TTCGTGGCTC AAGAACTCGA CCCCGCTGCA
CTGAATCTAA TGGAACGCCT TAAAGCCCAG TTCGATCCCC AGGGGATACT CAATCCACAA
AAAACGCTCC CCTTAAAAAC ATCAACTTAG
|
|---|
| Protein sequence | MNNSAPTATP EFLAALIQIV GEQRVRSDPA DCWPYGYDNS RRHALPEWVV FALTHEEVRD
LVRLCNKARV PIVPRGRGTG TTGATVPISG GLVLSLERMN RIRMLDPTNR AMVVEPGVTN
QEVQIAAGQQ GFFWPPDPTS AAFCTLGGNL AYNSAGPRAV KYGTPRENVL ALRAVTGAGE
EFRCGTYTTK GVVGYDLTRL LIGSEGTLAI ITEATLRLTP LPEAKRTLRA AYKDTESAGQ
AVADLMSQPL TPCALELMDR QAVTLVQAQG GIELPPGTGA LLMIEVDGPA TAMEDAVTQL
KKAAHNAGLL EIVAARTPQE SKQLWAARKA LSPALRTLAP KKINEDVVVP VSHLPALISG
LERLAKEFAI TIVNFGHAGN GNLHVNLLTD PDEPTERERT KKCLEQVFKL VLSLKGSLSG
EHGVGLEKRD FVAQELDPAA LNLMERLKAQ FDPQGILNPQ KTLPLKTST
|
|---|
| |