Gene Noc_0272 details

Gene Information

• Locus tag: Noc_0272
• ID: 3706443
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Nitrosococcus oceani ATCC 19707
• Kingdom: Bacteria
• Replicon accession: NC_007484
• Strand: +
• Start bp: 300556
• End bp: 302475
• Gene Length: 1920 bp
• Protein Length: 639 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637736788
• Product: peptidase M41, FtsH
• Protein accession: YP_342332
• Protein GI: 77163807
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0465] ATP-dependent Zn proteases
• TIGRFAM ID: [TIGR01241] ATP-dependent metalloprotease FtsH

Plasmid Coverage information

• Num covering plasmid clones: 16
• Plasmid unclonability p-value: 0.520053
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGATAACG AAAAGCAAGC CTCTCCACCT CCAGCAGCGC CCCCCCTTAA TTGGCGCTAT 
CTGCTCTGGA TAATCCTCTT GGGTATTTTT CTAATATCCT GGCTTGGCAA TGCAGGCCGT 
CAGGCAGGAG ATGAAATTAC TTATACGGAG TTTAAGCAGG CATTACATCA AGGGAAGATT 
GCAAAAGTTA CCCTTGAGGG TCAGCATATT TCAGGCACCT ATCACGAAGC TGGCGGAAAT 
ATACAGCCAG AAGGCAAGGA CTCTAAAGGA TTTTCCACGA CGAGACCTCC CTTTGATGAT 
CCAGAGTTGA TGAAACTGCT GGAGCAAAAA GGAGTAGTTG TGCAAGCGAA GAGCGAAGAA 
CCCTCCTTGT GGATGCAGGC CATCATTGGA ATACTGCCTT GGTTCTTGAT ATTGGGCCTG 
ATTTTTTATG TCTCCTATAG GATGCAGCAA CGCATGATGG GAGGAGGCAG GGGTGGTCCC 
TTTGGTTTCG GCAAGGCGCC GGTAAAACGC TTTCGCGAGG GGAGTATAGG AGTCACTTTT 
GAAGACGTTG CCGGGGTGGA AAACGCAAAG CGTGATCTGC GAGAGATTGT CGATTATCTG 
AAGGAACCAG GGCAGTTCAA AGCGGTAGGC GCCAAGATTC CCAAAGGTAT CCTTTTGGTA 
GGCCGCCCTG GGACGGGAAA AACACTTTTG GCCAGGGCGG TGGCCGGCGA AGCGGGTGTC 
CCTTTCTATA GCATTAGCGG TTCGGATTTT ATAGAGATGT TCGTTGGCGT GGGAGCAGCC 
CGGGTGCGGG ATATGTTTAA GGCCGCCAAG GAAGAGGCGC CTTCGATTTT GTTTATTGAT 
GAAATCGATT CCGTGGGACG CGCCCGGGGG ACGGGACTTG GGGGTGGCCA CGATGAACGG 
GAGCAGACTT TAAATCAAAT CTTGGGCGAA ATGGACGGTT TTGCAGCCCA TGAAAATGTT 
GTGGTTTTGG CGGCGACTAA CCGTCCTGAC GTGCTTGATC CTGCTTTACT TAGACCGGGA 
AGGTTTGACC GTAAAGTCGT TCTCGATCTT CCCGATAAAA AAGCCCGTCA ACGGGTGTTA 
GAAGTCCATA CCAAGAATGT TCCCCTCGCT GCTGATGTGG ATTTGGAAAG AGTTGCTAGG 
CGTACGGTGG GCTTTTCTGG GGCTGATCTT GCCAATCTGG TGAATGAGGC GGCCTTGCTG 
ACCGGACGGG AACGCAAGAA GGAGGTGGAC ATGGACATGT TTAACCTTGC CAGGGATAAA 
ATCGTATTGG GCGCCAAGCG GGAAACGATT TTAGGCGAGG AGGAGAAAAA GCTTGTGGCT 
TACCATGAAT CGGGCCATGC TTTGACGGCA TGGTTATTAC CTGAGGCTGA TCCCCTGCAC 
CAAGTCAGCA TTATTCCTCG TGGTATGGCT TTAGGAGTGA CGGAACAAGC TCCAGAAGAA 
GAACGGCATA GTTTGTCGCG GGCTTATTTG CTTGATCGGC TGGGGGTGAT GCTTGGGGGA 
CGCATCTCGG AAAAAATTAC TTTTGGTGAT GTCACCTCAG GGGCTGAATC CGATCTTAAA 
CAGGCGACTC AATTGGCCCG CCGTATGGTT TGCCAATGGG GAATGAGTGA TAAGATTGGG 
GCAGCGGCCT TTTCACGAAG TGAAGAGCAT GTTTTTCTGG GCCGAGAATT GTCTCAACCG 
CGGGATTTTA GCGAGCAGAC GGCTCAAATT ATTGATGATG AAATCCGCCG TATCCTTAGT 
GAAGTGGAAA GGAAGACGGA GAATTTGCTT CAAGAAAACC GCGCGAAGCT AGACGCATTA 
GCAAAAGCGC TTATCGAAGC CGAAACTCTT AATTTGGTGG AAGTAGAAAA AATCTTTAAG 
AATGTTAAAG AACTCCCGCA GGAAGGTCAT AATGAAGCTG TTGCTACGGG TGCTGGATGA 

 

Protein sequence

MDNEKQASPP PAAPPLNWRY LLWIILLGIF LISWLGNAGR QAGDEITYTE FKQALHQGKI 
AKVTLEGQHI SGTYHEAGGN IQPEGKDSKG FSTTRPPFDD PELMKLLEQK GVVVQAKSEE 
PSLWMQAIIG ILPWFLILGL IFYVSYRMQQ RMMGGGRGGP FGFGKAPVKR FREGSIGVTF 
EDVAGVENAK RDLREIVDYL KEPGQFKAVG AKIPKGILLV GRPGTGKTLL ARAVAGEAGV 
PFYSISGSDF IEMFVGVGAA RVRDMFKAAK EEAPSILFID EIDSVGRARG TGLGGGHDER 
EQTLNQILGE MDGFAAHENV VVLAATNRPD VLDPALLRPG RFDRKVVLDL PDKKARQRVL 
EVHTKNVPLA ADVDLERVAR RTVGFSGADL ANLVNEAALL TGRERKKEVD MDMFNLARDK 
IVLGAKRETI LGEEEKKLVA YHESGHALTA WLLPEADPLH QVSIIPRGMA LGVTEQAPEE 
ERHSLSRAYL LDRLGVMLGG RISEKITFGD VTSGAESDLK QATQLARRMV CQWGMSDKIG 
AAAFSRSEEH VFLGRELSQP RDFSEQTAQI IDDEIRRILS EVERKTENLL QENRAKLDAL 
AKALIEAETL NLVEVEKIFK NVKELPQEGH NEAVATGAG