| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1710b_A0679 |
|---|
| Symbol | sctV |
|---|
| ID | 3694004 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1710b |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007435 |
|---|
| Strand | - |
|---|
| Start bp | 875691 |
|---|
| End bp | 879674 |
|---|
| Gene Length | 3984 bp |
|---|
| Protein Length | 1327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637730933 |
|---|
| Product | type III secretion inner membrane protein SctV |
|---|
| Protein accession | YP_335838 |
|---|
| Protein GI | 76817842 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4789] Type III secretory pathway, component EscV |
|---|
| TIGRFAM ID | [TIGR01399] type III secretion protein, HrcV family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0489 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGGAGCT CCTCGTCAGA GACGCAGATA TTGCTGATGC GCGAACGCGG CTTGCGGATC
GAAGCCGCCC GACGGATTCG CGCCCGGCGC CTCGCCTGCC GTGCCTGCAG CGTCGCCGCT
CGCCGCCGCG ACCGACGCCG GCAGCTCCCA GACGCCCGTG CGTTGCGCGT GCTCCTTCGC
GAGCAGCACG TCGTGCTGCC GCTCGAGCGC GCGCACGAGC GCGATCGCCT GCGCGGGGCC
GCCGGCGGCC AGCACTTCGT CGGCGGCGAG CCGCCATTCG GGATCGCGCT TGACCTGCAG
CGCGAGCGCG AGCAGCGCCT TGCCGTAGAC CGCGTTCGAC GTGCCGTTCG AGATCTCCGC
GAACGCGCGC GCCGCGTCGT CCCAGTTGCC GAGCGCGATC TGCAGCATGC CGTCGAACAT
GTCGGCGGCC GGCAGTTGCG GCGCGAGCAC GCGCAGCGCG TCGATCAGCA GGCCGATGTC
GTAGGGATCG GCGGCCGGGC CGTCGAGCGC GCCGCCGAGC GCGAGGTTGG TGGCGTCGAT
CAGTCCGTTC AGCGCCGCGT GGCTGCATCG CAGGTAGGTC GGCCGGGATT CGTCCATGGT
GTGCGCTCCG TGTCGCCGCG TCGGCGGCGC ATGACGTTGA GGGAAAAGGC GTATGGGCCG
CAAGGTAGCA GCGCGCCGGG CGCGGGGGCG CGGCGATGCG AAGCGCGCGC GCCGGATGCG
AAGCACGGCG CGCGCTTCGC ATCCGGCGGC GCGGCTTCGG CTCGGCGCGC GCGCGGCGCG
CGGCGCGCCG CTAACGTACG CGGCATCTCC GACTCCCGAA GGAAACGCGG CGATGGCCGA
AGAGAAAACC GAAGAGCCCA CCGAGAAGAA GCTGAAGAAG GTGCGCGAGA AGGGCCAGGT
CGCCAAGAGC AAGGACATCG CCGACGCGAT GACGCTCGCG GCCGCGATCG GCGTGCTCAC
GGCGTGCGAA TCGATGCTCA CGGGCGGCCT CTCGCGCGCG GTTCGCACCG CGCTCGACTT
CGTGCGCGGC GAGCGCACCC CGCAGGCGAC GCTCGCCGCG CTGCACGATC TCGCCGCGAG
CGCCGTGCTG ACGATGCTGC CGTTCGTCGC CGCCGCGATC GTCGCGGGCA TCGTGTCGCA
GGCGCCGCAG GCGGGCTTCC TGATCACGCT CGAGCCCGTG ATGCCGAAGT TCGACGCGAT
CAATCCGATG GCGGGCATCA AGCGGATCTT CTCGCTGAAG TCGCTGCTCG AGCTCGTGAA
GATGATCGTC AAGGCGCTCG TGCTCGCGTG CGTGGCATGG AAGATGATGA CCTCGCTGTT
TCCGCTCGTC GTCGCGAGCG TGTACGAAGC GACGCCGCAG CTCGCGCGCG TGCTGTGGAC
GGTGCTGATG AAGCTGCTCG GCACCGTGTC GGTCGTCGTC GCGGTGCTCG CGGCGGCCGA
TTACAAGATC GCACGCGTGA TGTTCGTTCG CGAGAACCGG ATGACGAAGG AGGAAGTCAA
GCGCGAGCAC AAGGAGAGCG ACGGCGATCC GCACACGAAG GGCGAGCGCC GCCGGCTCGC
GCGCGAGATT GCGACGAGCG CGCCGCCGCG GCAGCGGGTC GGCCAGGCGA ACGTGCTCGT
CGTCAACCCG ACGCACTACG CGGTCGCGAT CCGCTATGCG CCCGACGAGC ATCCGCTGCC
GCGGGTCATC GAGAAGGCCG TCGACGACGG CGCGCTCGCG CTGCGCCGCC ACGCGCACGC
GCTCGGCGTG CCGATCGTCG GCAATCCGAG CGTCGCGCGC GCGCTGTACC GCGTCGAGCG
CGACGCGTCG ATTCCCGAAG AGCTGTTCGA GACGGTGGCC GCGATCCTGC GCTGGGTCGA
GTCCCTCTCG GGCGCGCGCG CGGTCGCCGC CGTTTCCTCC GCGAGGTCGT CATGACGCTG
AAATCCCTCA AACTTCCCGC CGGCGGCGAG GTCGGCATCA CGGTGCTCGT CGTCGCGATC
GTCTCGCTGA TGATCCTGCC GCTGCCGCCC GAGGTGATCG ACGTGCTGCT CGGCGTGAAC
ATCGCGATCA GCGTCACGCT GCTGATGGTG ACGATGTACG TCGGCAGCAT CGTGTCGCTG
TCGGTGTTCC CGTCGATCCT GCTGTTCACG ACGCTGTACC GGCTGTCGCT GAACATCGCG
TCGACGAAAT CGATCCTGCT GCACGCGAAC GCGGGCGACA TCATCGAGAG CTTCGGCGAG
CTCGTCGTCG GCGGCAATCT CGTCGTCGGC CTCGTCGTGT TCCTGATCAT CACGATCGTG
CAGTTCATCG TGATCGCGAA GGGCTCGGAG CGCGTGGCCG AAGTCGGCGC GCGCTTCACG
CTCGACGCGA TGCCGGGCAA GCAGATGAGC ATCGACGCGG ATCTGCGCGC GAACATCCTG
ACGCCGGACG AGGCGCGCCG CAAGCGCGCG ACGCTCGCCA AGGAAAGCCA GTTGCACGGC
GGGATGGACG GCGCGATGAA GTTCGTCAAG GGCGACGCGA TCGCCGGGCT CATCATCACG
CTCGTGAACA TCGTCGCGGG CATCGCGATC GGCGTGATGT ACCACGGGAT GACGGCGGGG
GACGCCGCGA ACCGCTTCTC GATCCTGTCG GTCGGCGATG CGATGGTGTC GCAGATTCCG
TCGCTGCTGA TCTCGGTCGC GGCCGGCGTG ATGATCACGC GCGTCGCCGA CGATCACGAC
GACGGCGACG GCACGTCGCT CGGCTCGGAG ATCGCCAGGC AACTGGGCGG CAGCCATCGC
GCGCTGTATT TCGCCGCGGT GCTGCTGATC GGCTTCGCGG CGGTGCCCGG CTTTCCGGCC
GCGCTCTTCG TGCTGCTGTC GGGCATGCTC GCGTTCGCCG GCTACCGGCT GCAAAAGGGC
GCGCGGCGCA CGACCGCGCG CGGCGAGCCG GTGATCGCGC TGCAGCGCGC GGGCGCGAAG
AGCAGCACGC CGTCGATTCT GCCGCGCGCG CCGCTATTCA CCTGCGCGAT CGGCGTGCGC
GTCGCGCCCG ATCTCGTCGC CCGGCTCGCG CCCGCCGCGC TCGACCGCGC GTTCGACGAG
GAGCGCGCGA AGCTGCAGGA AGAACAGGGG CTGCCGTTTC CCGGCATCAC GCTGTGGACG
AGCGACGCGC TGCCCGCGTC GACGTGCGAG ATCCTGATGC GCGACGTGCC GCAGGCGCGG
CTCGAGTTGC CGGCCGACCA GACGATGCTG CCCGACGCGG CGTCGGACCC GGCGCTCGCC
GGCCGCTGCA CGAAGCGCGG GCCCGCGGGC GGCCTCGCCG AGAGCTACTG GATCGACGAC
AAGGCGGTGC CGGCCGGCGC GCGCGCGTGG CGCGCCGAGC AGGTGGTCGC GCACGAGACG
ATCGCGCTGC TCAGGCGCAA CGCGCACCTG TTCCTGGGTA TTCAGGAAGC CCAATGGATA
CTCGACCAGC TCGGCGTCGA TTATCCGGGG CTCGTCGCCG AAGTGCAGAA GGCGCTGCCG
ACGCAGCGCA TCGCCGACGT GCTGCGCCGC CTGCTCGAGG AGCATATTCC GATCCGCAAC
GCGCGCGACA TCATGGAGAG CCTCGTCGCA TGGGGGCCGA AGGAGAAGGA CATGCTGATG
CTCGCCGAGT ACGTGCGCGG CGACCTGTCG CGCTATCTCG CCTATCGCGC GGCGCGCGGC
GCGCGGCAGT TGCCGGCCGT GCTGCTCGAC ATGGCGGTCG AGCAGCACAT CCGGCAGTCG
ATCAAGCAGA CGCCCGCGGG CAACTTTCTC GCGCTGCCGC CCGAGCAGGT GCGCTATCTC
GTCGACAGCG TCGCGTCGTT CGTCGGCGAA GCGCCGCGCG ACGATGTCGC GCTCGTCACG
TCGATGGACG TGCGCCGCTA CACGCGGCGC ATGATCGAGG CGCGGCTCGA CTGGCTGCCC
GTCTATTCGT ATCAGGAGCT CGGCGACCAG GTGCAATTGC AGCCGGTCGG CCGCGTGACG
ATGCCGACGG CGGCCCACGC ATGA
|
|---|
| Protein sequence | MRSSSSETQI LLMRERGLRI EAARRIRARR LACRACSVAA RRRDRRRQLP DARALRVLLR
EQHVVLPLER AHERDRLRGA AGGQHFVGGE PPFGIALDLQ REREQRLAVD RVRRAVRDLR
ERARRVVPVA ERDLQHAVEH VGGRQLRREH AQRVDQQADV VGIGGRAVER AAEREVGGVD
QSVQRRVAAS QVGRPGFVHG VRSVSPRRRR MTLREKAYGP QGSSAPGAGA RRCEARAPDA
KHGARFASGG AASARRARGA RRAANVRGIS DSRRKRGDGR RENRRAHREE AEEGAREGPG
RQEQGHRRRD DARGRDRRAH GVRIDAHGRP LARGSHRARL RARRAHPAGD ARRAARSRRE
RRADDAAVRR RRDRRGHRVA GAAGGLPDHA RARDAEVRRD QSDGGHQADL LAEVAARARE
DDRQGARARV RGMEDDDLAV SARRRERVRS DAAARARAVD GADEAARHRV GRRRGARGGR
LQDRTRDVRS REPDDEGGSQ ARAQGERRRS AHEGRAPPAR ARDCDERAAA AAGRPGERAR
RQPDALRGRD PLCARRASAA AGHREGRRRR RARAAPPRAR ARRADRRQSE RRARAVPRRA
RRVDSRRAVR DGGRDPALGR VPLGRARGRR RFLREVVMTL KSLKLPAGGE VGITVLVVAI
VSLMILPLPP EVIDVLLGVN IAISVTLLMV TMYVGSIVSL SVFPSILLFT TLYRLSLNIA
STKSILLHAN AGDIIESFGE LVVGGNLVVG LVVFLIITIV QFIVIAKGSE RVAEVGARFT
LDAMPGKQMS IDADLRANIL TPDEARRKRA TLAKESQLHG GMDGAMKFVK GDAIAGLIIT
LVNIVAGIAI GVMYHGMTAG DAANRFSILS VGDAMVSQIP SLLISVAAGV MITRVADDHD
DGDGTSLGSE IARQLGGSHR ALYFAAVLLI GFAAVPGFPA ALFVLLSGML AFAGYRLQKG
ARRTTARGEP VIALQRAGAK SSTPSILPRA PLFTCAIGVR VAPDLVARLA PAALDRAFDE
ERAKLQEEQG LPFPGITLWT SDALPASTCE ILMRDVPQAR LELPADQTML PDAASDPALA
GRCTKRGPAG GLAESYWIDD KAVPAGARAW RAEQVVAHET IALLRRNAHL FLGIQEAQWI
LDQLGVDYPG LVAEVQKALP TQRIADVLRR LLEEHIPIRN ARDIMESLVA WGPKEKDMLM
LAEYVRGDLS RYLAYRAARG ARQLPAVLLD MAVEQHIRQS IKQTPAGNFL ALPPEQVRYL
VDSVASFVGE APRDDVALVT SMDVRRYTRR MIEARLDWLP VYSYQELGDQ VQLQPVGRVT
MPTAAHA
|
|---|
| |