Gene BURPS1710b_2178 details

Gene Information

• Locus tag: BURPS1710b_2178
• Symbol: sigD
• ID: 3689774
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia pseudomallei 1710b
• Kingdom: Bacteria
• Replicon accession: NC_007434
• Strand: -
• Start bp: 2417642
• End bp: 2418178
• Gene Length: 537 bp
• Protein Length: 178 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637728634
• Product: RNA polymerase sigma factor
• Protein accession: YP_333573
• Protein GI: 76811489
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family

Plasmid Coverage information

• Num covering plasmid clones: 26
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGGAATCCC GCTTGAGAGC GCTGTTCGTC AGCGGCCTCG CCGGCCATGC GCCGGATTAC 
CGGTCGTTCC TTTCGGAGCT GACCCGCCAC TTGCGCGGCT TTCTCCGCAA GCGGATCCCG 
CAGTTTGACG CGGACATCGA AGATCTCGTG CAGGAGATCC TGCTCGCCGT CCATAATGCA 
CGTCATACGT ATCGCGCGGA CGAACCGCTG ACGGCGTGGG TACATGCCAT CGCGCGCTAC 
AAGCTGATGG ATTTCTTCCG GACGCGCGCC CGCCGCGAAG CGCTGCACGA TCCGCTTGAC 
GATCACACGG ACATCTTTTC CGAACCCGAC GACGACGCGT CCGACGCGCA TCGCGACATC 
GGCAGGCTGC TGGATCATCT GCCGGACAAG CAACGGCTAT CGATCCTGCA TGTGAAGCTG 
CAGGGCTTGT CGGTTGCCGA GGCGGCGCAA CTGATCGGTG CGTCCGAATC CGTCGTCAAG 
GTCAGCATTC ACAGGGGACT GAAGGCGCTC GCGGCGCGCG TGCGAGGAGT GGTATGA 

 

Protein sequence

MESRLRALFV SGLAGHAPDY RSFLSELTRH LRGFLRKRIP QFDADIEDLV QEILLAVHNA 
RHTYRADEPL TAWVHAIARY KLMDFFRTRA RREALHDPLD DHTDIFSEPD DDASDAHRDI 
GRLLDHLPDK QRLSILHVKL QGLSVAEAAQ LIGASESVVK VSIHRGLKAL AARVRGVV