Gene Ava_4846 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_4846 
Symbol 
ID3679344 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp6100353 
End bp6102581 
Gene Length2229 bp 
Protein Length742 aa 
Translation table11 
GC content34% 
IMG OID637720203 
Productlipopolysaccharide biosynthesis 
Protein accessionYP_325338 
Protein GI75911042 
COG category[D] Cell cycle control, cell division, chromosome partitioning
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0489] ATPases involved in chromosome partitioning
[COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis 
TIGRFAM ID[TIGR01007] capsular exopolysaccharide family 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.0566173 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0374732 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAATCAA AAGAATCGAT AGATTTAGAT TTAAGCAGAT ATTTTGCTGG ACTGAAGCGT 
CGTTGGTTAG TGGCTATTAA TATCTTTACG GTAACAGTTG CTCTTAGTGC TTTATCTACC
ACCTTGCTGA AATCATCCTA TGAAGCAGAA GGAAAACTTT TATTCAAAGT ACCATCTTTT
AAGATCATAG GTCAAAATTT ATTAGCTAGT GGTTCAGAAG CTGAAGGGGA TCTTAAATCA
CTGGTATCCA GTCAAAACCC TATTAATACT GAGATAGAGG TTCTCTCTTC TCCGATGATA
CTAGACAAGG TAATAGAAGA GCTAAATCTG AAAAACAAAC AAGGTAAACC CTTAAATTAT
AATACTCTCA AATCTGGACT AACTTTAAAA ATTATTGGTG GTACAGATGT TTTAAGAGTG
GCTTATAAAA GTCGTAATCC TGAAGAGGGA GCAGCGATTG TGAACAAGGT GATGGACTTA
TATTTAGAGA ACAGTATTCT TACAAGTAGA GCAGAAGCTG AAAAGACCAG AATGCTGATT
GCTCAGCAAT TAAATCAACC CAAATTAAAT TTACAAAGAG CAGAATTAGC CTTACGCAGT
TTTAAAGAAC AAAATAAAAT TGTCAATCTT GCAGAAGAAT CTAAATTAGC AGTTTTACAA
ATTAACAATT TAGATACTCA GGTTGCTAAT GTCAGTTCAG AATTAGAAAA AGTTACATCT
AAAAATAATA CACTCCGCAA GCAAATTTCT CTGGATGTAG AGCAAGCGAT CGCTATAAAT
GATCTCTCTC AATCCCAGGC AATTCAATCT ATTTTAACTC AAATTCAACA AGTAGAACAA
AAACTCGCTT TAGAACGTAG TAGATTTCTG GATAACGATC CGAAAATAGT TGATTTGGAA
ACTAACAAAA AAAATCTGCA AGATTTATTA CAAAAACAAA CTAACCAAAT TATTGGTAGT
CAAGTAAAAC TACCACAGAC AAAGTTCCCA CTTAGTGAAC TTAAGCAAAG TATGATTAAA
GAATTTTTGC AATCGGAACA AGAACGATTG AGTTTAATTA AAAAATTAAA TTCTTTGTCT
AAGTCTCGTG CAGATTATGA ACAACGCTTA CGAATTATAC CCCAATTAGA ACAAAATTTA
GGTGAATTAG AACAAAATCT CGAAAGCGCT CGCTCGACTT ATCAGACTCT CTTAACTAAA
GTTCAAGAAT TAAGACTAGC AGAAAGTAAA AATACTGCAA GTGCGAGGAT TATTGCTAAT
GCTTTGGTTC CTGATAAACC AGATTCCAGA AATAAAATAA TTGTTATATT GCTAGGTATT
TTATTTGGGA TATTTTTGTC AATTACTACA GTTTTGTTTT TAGAAATAAG AGATAGATCC
CTAAAAACAA TTCAAGAAAT TAGAGAAATA TTTGAATATA CTTTACTAGG AATTATTCCT
TCAGCAACTA CGAAGAAAAT AACATCTTCC CATCGGGATG TAGAGTTAAC TAATCTGGAA
GTAGCTGTCA GAGATACGCC TGATTCATTG ACTAGCGAAA TGTATCGCAT GATTCAAGCT
AATTTAAGAT TTCTGAGTTC TGATCAAGTT CTCAAAAACT TAGTAATAAC AAGTGCTTTA
CCTAGAGAAG GTAAATCTAC TGTTTCAGCT AATTTAGCTG CTGCGATCGC TCAATTAGGA
CGTAGAGTTT TATTAATCGA TGGAGATATG CGTTCTCCAT CTCAACATCA ATTCTGGCAA
TTGAATAATT TAGTAGGTTT AAGTGAAGTA CTTGTTGGAC AAGTAGAATT TATTACTGCT
ATATCTAAGG TAATGGATAA TTTGGATGTT TTGACAGCAG GTGTCAGACC TCCCAATCCG
TTGGCTTTGC TAGATTCAAA GCGAATGGCT GCATTAATCG CTGATTTTTC ATCACAGTAT
GATTTTGTGA TTATTGACGC TCCTCCTCTG CTTGTTGCGG CTGATTCCCT AACTTTAAGC
CACATGACAG ATGGAATTTT ATTAGTATCT AGACCTAATG TAATTGATTC GGGTAGTGCC
TGGGCTGCTA AAGATACATT AGAGCGTTCT GGACAAAAGG TTTTAGGTTT ATTGATTAAT
GGTGTAACCG AGAAAAATGA ATTTAGCAGT GATTTTTATG TTGCTAAAAA ACATGAGTTC
GACGAAACTA AAAAATGGCA AGAGGTAGTG CCTGTGGGGC AAACACATCC AAATATTAAA
GATCAATAA
 
Protein sequence
MQSKESIDLD LSRYFAGLKR RWLVAINIFT VTVALSALST TLLKSSYEAE GKLLFKVPSF 
KIIGQNLLAS GSEAEGDLKS LVSSQNPINT EIEVLSSPMI LDKVIEELNL KNKQGKPLNY
NTLKSGLTLK IIGGTDVLRV AYKSRNPEEG AAIVNKVMDL YLENSILTSR AEAEKTRMLI
AQQLNQPKLN LQRAELALRS FKEQNKIVNL AEESKLAVLQ INNLDTQVAN VSSELEKVTS
KNNTLRKQIS LDVEQAIAIN DLSQSQAIQS ILTQIQQVEQ KLALERSRFL DNDPKIVDLE
TNKKNLQDLL QKQTNQIIGS QVKLPQTKFP LSELKQSMIK EFLQSEQERL SLIKKLNSLS
KSRADYEQRL RIIPQLEQNL GELEQNLESA RSTYQTLLTK VQELRLAESK NTASARIIAN
ALVPDKPDSR NKIIVILLGI LFGIFLSITT VLFLEIRDRS LKTIQEIREI FEYTLLGIIP
SATTKKITSS HRDVELTNLE VAVRDTPDSL TSEMYRMIQA NLRFLSSDQV LKNLVITSAL
PREGKSTVSA NLAAAIAQLG RRVLLIDGDM RSPSQHQFWQ LNNLVGLSEV LVGQVEFITA
ISKVMDNLDV LTAGVRPPNP LALLDSKRMA ALIADFSSQY DFVIIDAPPL LVAADSLTLS
HMTDGILLVS RPNVIDSGSA WAAKDTLERS GQKVLGLLIN GVTEKNEFSS DFYVAKKHEF
DETKKWQEVV PVGQTHPNIK DQ