Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_4846 |
Symbol | |
ID | 3679344 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | + |
Start bp | 6100353 |
End bp | 6102581 |
Gene Length | 2229 bp |
Protein Length | 742 aa |
Translation table | 11 |
GC content | 34% |
IMG OID | 637720203 |
Product | lipopolysaccharide biosynthesis |
Protein accession | YP_325338 |
Protein GI | 75911042 |
COG category | [D] Cell cycle control, cell division, chromosome partitioning [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0489] ATPases involved in chromosome partitioning [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
TIGRFAM ID | [TIGR01007] capsular exopolysaccharide family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0566173 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0374732 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCAATCAA AAGAATCGAT AGATTTAGAT TTAAGCAGAT ATTTTGCTGG ACTGAAGCGT CGTTGGTTAG TGGCTATTAA TATCTTTACG GTAACAGTTG CTCTTAGTGC TTTATCTACC ACCTTGCTGA AATCATCCTA TGAAGCAGAA GGAAAACTTT TATTCAAAGT ACCATCTTTT AAGATCATAG GTCAAAATTT ATTAGCTAGT GGTTCAGAAG CTGAAGGGGA TCTTAAATCA CTGGTATCCA GTCAAAACCC TATTAATACT GAGATAGAGG TTCTCTCTTC TCCGATGATA CTAGACAAGG TAATAGAAGA GCTAAATCTG AAAAACAAAC AAGGTAAACC CTTAAATTAT AATACTCTCA AATCTGGACT AACTTTAAAA ATTATTGGTG GTACAGATGT TTTAAGAGTG GCTTATAAAA GTCGTAATCC TGAAGAGGGA GCAGCGATTG TGAACAAGGT GATGGACTTA TATTTAGAGA ACAGTATTCT TACAAGTAGA GCAGAAGCTG AAAAGACCAG AATGCTGATT GCTCAGCAAT TAAATCAACC CAAATTAAAT TTACAAAGAG CAGAATTAGC CTTACGCAGT TTTAAAGAAC AAAATAAAAT TGTCAATCTT GCAGAAGAAT CTAAATTAGC AGTTTTACAA ATTAACAATT TAGATACTCA GGTTGCTAAT GTCAGTTCAG AATTAGAAAA AGTTACATCT AAAAATAATA CACTCCGCAA GCAAATTTCT CTGGATGTAG AGCAAGCGAT CGCTATAAAT GATCTCTCTC AATCCCAGGC AATTCAATCT ATTTTAACTC AAATTCAACA AGTAGAACAA AAACTCGCTT TAGAACGTAG TAGATTTCTG GATAACGATC CGAAAATAGT TGATTTGGAA ACTAACAAAA AAAATCTGCA AGATTTATTA CAAAAACAAA CTAACCAAAT TATTGGTAGT CAAGTAAAAC TACCACAGAC AAAGTTCCCA CTTAGTGAAC TTAAGCAAAG TATGATTAAA GAATTTTTGC AATCGGAACA AGAACGATTG AGTTTAATTA AAAAATTAAA TTCTTTGTCT AAGTCTCGTG CAGATTATGA ACAACGCTTA CGAATTATAC CCCAATTAGA ACAAAATTTA GGTGAATTAG AACAAAATCT CGAAAGCGCT CGCTCGACTT ATCAGACTCT CTTAACTAAA GTTCAAGAAT TAAGACTAGC AGAAAGTAAA AATACTGCAA GTGCGAGGAT TATTGCTAAT GCTTTGGTTC CTGATAAACC AGATTCCAGA AATAAAATAA TTGTTATATT GCTAGGTATT TTATTTGGGA TATTTTTGTC AATTACTACA GTTTTGTTTT TAGAAATAAG AGATAGATCC CTAAAAACAA TTCAAGAAAT TAGAGAAATA TTTGAATATA CTTTACTAGG AATTATTCCT TCAGCAACTA CGAAGAAAAT AACATCTTCC CATCGGGATG TAGAGTTAAC TAATCTGGAA GTAGCTGTCA GAGATACGCC TGATTCATTG ACTAGCGAAA TGTATCGCAT GATTCAAGCT AATTTAAGAT TTCTGAGTTC TGATCAAGTT CTCAAAAACT TAGTAATAAC AAGTGCTTTA CCTAGAGAAG GTAAATCTAC TGTTTCAGCT AATTTAGCTG CTGCGATCGC TCAATTAGGA CGTAGAGTTT TATTAATCGA TGGAGATATG CGTTCTCCAT CTCAACATCA ATTCTGGCAA TTGAATAATT TAGTAGGTTT AAGTGAAGTA CTTGTTGGAC AAGTAGAATT TATTACTGCT ATATCTAAGG TAATGGATAA TTTGGATGTT TTGACAGCAG GTGTCAGACC TCCCAATCCG TTGGCTTTGC TAGATTCAAA GCGAATGGCT GCATTAATCG CTGATTTTTC ATCACAGTAT GATTTTGTGA TTATTGACGC TCCTCCTCTG CTTGTTGCGG CTGATTCCCT AACTTTAAGC CACATGACAG ATGGAATTTT ATTAGTATCT AGACCTAATG TAATTGATTC GGGTAGTGCC TGGGCTGCTA AAGATACATT AGAGCGTTCT GGACAAAAGG TTTTAGGTTT ATTGATTAAT GGTGTAACCG AGAAAAATGA ATTTAGCAGT GATTTTTATG TTGCTAAAAA ACATGAGTTC GACGAAACTA AAAAATGGCA AGAGGTAGTG CCTGTGGGGC AAACACATCC AAATATTAAA GATCAATAA
|
Protein sequence | MQSKESIDLD LSRYFAGLKR RWLVAINIFT VTVALSALST TLLKSSYEAE GKLLFKVPSF KIIGQNLLAS GSEAEGDLKS LVSSQNPINT EIEVLSSPMI LDKVIEELNL KNKQGKPLNY NTLKSGLTLK IIGGTDVLRV AYKSRNPEEG AAIVNKVMDL YLENSILTSR AEAEKTRMLI AQQLNQPKLN LQRAELALRS FKEQNKIVNL AEESKLAVLQ INNLDTQVAN VSSELEKVTS KNNTLRKQIS LDVEQAIAIN DLSQSQAIQS ILTQIQQVEQ KLALERSRFL DNDPKIVDLE TNKKNLQDLL QKQTNQIIGS QVKLPQTKFP LSELKQSMIK EFLQSEQERL SLIKKLNSLS KSRADYEQRL RIIPQLEQNL GELEQNLESA RSTYQTLLTK VQELRLAESK NTASARIIAN ALVPDKPDSR NKIIVILLGI LFGIFLSITT VLFLEIRDRS LKTIQEIREI FEYTLLGIIP SATTKKITSS HRDVELTNLE VAVRDTPDSL TSEMYRMIQA NLRFLSSDQV LKNLVITSAL PREGKSTVSA NLAAAIAQLG RRVLLIDGDM RSPSQHQFWQ LNNLVGLSEV LVGQVEFITA ISKVMDNLDV LTAGVRPPNP LALLDSKRMA ALIADFSSQY DFVIIDAPPL LVAADSLTLS HMTDGILLVS RPNVIDSGSA WAAKDTLERS GQKVLGLLIN GVTEKNEFSS DFYVAKKHEF DETKKWQEVV PVGQTHPNIK DQ
|
| |