Gene Ava_3903 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_3903 
Symbol 
ID3683576 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp4853884 
End bp4855128 
Gene Length1245 bp 
Protein Length414 aa 
Translation table11 
GC content45% 
IMG OID637719255 
Productribulose 1,5-bisphosphate carboxylase small subunit 
Protein accessionYP_324403 
Protein GI75910107 
COG category[C] Energy production and conversion 
COG ID[COG4451] Ribulose bisphosphate carboxylase small subunit 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones34 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGTTATT ATATCGCTCC GCGCTTTCTG GATAAACTTG CTGTTCACAT CACCAAAAAC 
TTTTTAAATA TTCCTGGTGT GCGAGTTCCC TTAATTTTAG GGATTCATGG ACGTAAAGGA
GAAGGGAAAA CCTTTCAGTG TGAGTTAGCT TTTGAGAAGA TGGGTATTGA AGTCACACTC
ATCTCCGGCG GTGAATTGGA AAGTCCCGAT GCGGGAGACC CAGCCCGGTT GATTCGGCTG
CGCTATCGGG AAACGGCAGA ACTGATTAAA GTGCGGGGTA AAATGTGCGT GCTGATGATT
AACGATTTAG ATGCAGGTGC AGGACGCTTT GATGAAGGTA CGCAATATAC TGTAAATACT
CAGTTGGTAA ATGCCACACT GATGAATATT GCCGATAATC CCACAGATGT ACAGTTACCC
GGTAGTTATG ATTCCAACCC GATACGGCGT GTCCCCATTA TCGTGACAGG TAATGATTTT
TCTACTCTCT ACGCACCATT GATTCGGGAT GGACGGATGG AGAAATTCTA TTGGGAACCC
AACCGCGATG ATAAGGTGGG AATTGTCGGG GGGATTTTTG CTGAGGATGG ACTCTCAAAA
CGAGAAATTG AACAATTAGT TGATACTTTC CCCAAGCAAT CGATTGACTT TTTTAGCGCT
TTACGTTCTC GAATTTACGA CGAACAAATC CGCGACTTTA TCCATCAAGT TGGGTTTGAA
CGTATATCTC TACGTGTTGT GAACAGCGTA GAAGCGCCGC CAGAATTTAA AAAGCCAGAT
TTCAGCCTTG CTCATTTGAT CGAGTCTGGT AACTTGGTGT TGGGTGAACA ACAACGGGTA
GACAATTCTC AGCTAGTGGA TGAGTATAAT CGATTGAATC GCGGGAGGGG TTATCAAGCA
GCGCCACCGC CTGAAGCGCC CATGATTCAG CCAGTCAATA ATAGTTCTCA CAAGCGAGAG
ACATCTAATA CTCATTTGAG TTTAGAAACC CAAGAACAAA TCCGGCAAAT CTTGTCTCAA
GGTCACAAAA TTACTTTTGA ACACGTAGAT GCACGCCGCT TCCGCACGGG TTCTTGGCAA
AGTTGCGGTA CTCTGCATAT TGATGCAGAG TCAGATGCTA TTTCAACACT AGAGGCTTGC
TTAGTTGATT ATGAGGGTGA GTATGTGCGC TTGGTAGGGA TAGACCCGAA AGGTAAGCGG
CGGGTTGTGG AGACAATTAT TCAACGACCA AATGACAAAA ACTAA
 
Protein sequence
MSYYIAPRFL DKLAVHITKN FLNIPGVRVP LILGIHGRKG EGKTFQCELA FEKMGIEVTL 
ISGGELESPD AGDPARLIRL RYRETAELIK VRGKMCVLMI NDLDAGAGRF DEGTQYTVNT
QLVNATLMNI ADNPTDVQLP GSYDSNPIRR VPIIVTGNDF STLYAPLIRD GRMEKFYWEP
NRDDKVGIVG GIFAEDGLSK REIEQLVDTF PKQSIDFFSA LRSRIYDEQI RDFIHQVGFE
RISLRVVNSV EAPPEFKKPD FSLAHLIESG NLVLGEQQRV DNSQLVDEYN RLNRGRGYQA
APPPEAPMIQ PVNNSSHKRE TSNTHLSLET QEQIRQILSQ GHKITFEHVD ARRFRTGSWQ
SCGTLHIDAE SDAISTLEAC LVDYEGEYVR LVGIDPKGKR RVVETIIQRP NDKN