Gene Ava_3888 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_3888 
Symbol 
ID3683619 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp4842189 
End bp4842965 
Gene Length777 bp 
Protein Length258 aa 
Translation table11 
GC content33% 
IMG OID637719240 
ProductFatty acid desaturase 
Protein accessionYP_324388 
Protein GI75910092 
COG category[I] Lipid transport and metabolism 
COG ID[COG3239] Fatty acid desaturase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones37 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTCAGT GTCAACCATC ATCTCTACGT GCAGAAAAAC TGGTTTTATT GTCATCGACA 
ATTAGGGATG ATAAAAATAT TAATAAGGGT ATATTTGTTG CCTGTTTTAT CTTATTTTTA
TGGGCAATTA GTTTAATCTT ATTACTCTCA ATAGATACAT CCATAATTAA TCAGGGCTTA
TTAATCATAG CCATGCTTTG GCAGACATTC TTATATACAG GTTTATTTAT TACTGCCCAT
GATGCCATGC ACGGCGTAGT TTATCCCAAA AATCCCAAAA TAAATAATTT TATAGGTAAG
CTCACTCTCA TCTTGTATGG ACTATTTCCT TATAAAGATT TATTGAAAAA ACATTGGTTA
CACCACGGAC ATCCTGGTAC TGATTTAGAC CCTGATTATT ACAATGGTCA TCCCCAAAAC
TTCTTTCTTT GGTATCTACA TTTTATGAAG TCTTATTGGA GATGGACACA AATTTTCGGA
TTAGTGATGA TTTTTCACGG ACTTAAAAGT ATTGTACATA TACCAGAAAA TAATTTAATT
ATATTTTGGA TGATCCCTTC TATTTTAAGT TCAGTACAAC TATTTTATTT TGGTACATTT
TTACCGCATA AAAAGCTAGA AGGTGGTTAT ACTAACCCCC ATTGTGCGCG CAGTATCCCA
TTACCTCTTT TTTGGTCTTT CGTCACTTGC TATCACTTCG GTTACCACAA AGAGCATCAC
GAATATCCTC AACTTCCTTG GTGGAAATTA CCGGAAGCTT ACAAAATATC TTTATAA
 
Protein sequence
MVQCQPSSLR AEKLVLLSST IRDDKNINKG IFVACFILFL WAISLILLLS IDTSIINQGL 
LIIAMLWQTF LYTGLFITAH DAMHGVVYPK NPKINNFIGK LTLILYGLFP YKDLLKKHWL
HHGHPGTDLD PDYYNGHPQN FFLWYLHFMK SYWRWTQIFG LVMIFHGLKS IVHIPENNLI
IFWMIPSILS SVQLFYFGTF LPHKKLEGGY TNPHCARSIP LPLFWSFVTC YHFGYHKEHH
EYPQLPWWKL PEAYKISL