| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_3177 |
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| Symbol | |
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| ID | 3680655 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007413 |
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| Strand | + |
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| Start bp | 3944819 |
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| End bp | 3945517 |
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| Gene Length | 699 bp |
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| Protein Length | 232 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 637718526 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_323680 |
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| Protein GI | 75909384 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 32 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.095278 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCAAA AAAGCCAGAT GGAAACAAGA TTTGTTAAAC CTCTTAGCTG TCTAACGCTG
AGTATCATTA CAACCATTGG TATATTGCCT CCCGCAACAG CACAGGAAAC TTCCCCAGCG
AAATCAGCCT GTGAGCAAGT TTTAAGCAAC GCAGAACAAA AACCGCGAAC CAAACAAGTA
CAAAAACTGG CGCAGTTTGC AGATCCCCAA CAAGAGCGAT CGCAACTGAT TCAACAAGCT
AATGCGCTAT TTAGTCAAGG TGATTTACCA GGTGCAGAAG TAAACCTGTG TAAATTTTTG
AAAAAATACT CAGATGATGC CTTCGGACAC TTTCAATTAG GTAATGTATT TTTCCGTGGG
AAAAAAGTAG AAGCTGCAAT CAGTGCCTAT CAAGAAGCCA TTCGCCTCAA ATCGCGGTAC
GCCGTGGCTT ACAATGCACT GGGCATAGTT TATGCTAGTC AAAATCGCTG GAGTGATGCG
ATCGCCCAAT ATCAAAAAGC TTTAGAAATC AATCCCGATT ATGGCGACGC TCTCACTAAT
GTCGCTTTGG TATTGTGGCA AACAAATAAA AAAGATGAAG CCCTAGTTTC TTTAGAAAAA
GCTTTAAATA TTTTCAAAAA ACAGAATAGA AACGAAAAAG CTAACCAAGT CGAACAATTA
TTGCAGAGAA TCAAAAACTC TGATGATAAT CTCTCATAA
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| Protein sequence | MKQKSQMETR FVKPLSCLTL SIITTIGILP PATAQETSPA KSACEQVLSN AEQKPRTKQV
QKLAQFADPQ QERSQLIQQA NALFSQGDLP GAEVNLCKFL KKYSDDAFGH FQLGNVFFRG
KKVEAAISAY QEAIRLKSRY AVAYNALGIV YASQNRWSDA IAQYQKALEI NPDYGDALTN
VALVLWQTNK KDEALVSLEK ALNIFKKQNR NEKANQVEQL LQRIKNSDDN LS
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