| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_2767 |
|---|
| Symbol | |
|---|
| ID | 3681895 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 3412791 |
|---|
| End bp | 3416357 |
|---|
| Gene Length | 3567 bp |
|---|
| Protein Length | 1188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 47% |
|---|
| IMG OID | 637718113 |
|---|
| Product | transcription-repair coupling factor |
|---|
| Protein accession | YP_323275 |
|---|
| Protein GI | 75908979 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
|---|
| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTTTT CTTCTATTGT GCGTGCCTTG GCGCGATCGC CACTCACCAC TGAGTTACTT
TCTAAGCTCA ATCGCCAGCA AGATTTGCGA TTAAATGGCA TTCCCCGTCT GCCTAAGGGC
TTGGTGGCTT CGGCTTTGGC ACAAAATTCT GGCAATAATT TGTTTGTGGT TTGCGCCACT
TTAGAAGAAG CTGGACGCGC TTACGCACAG TTGGAGGCGA TGGGATGGCA AACAGTACAT
TTTTACCCCA CTTCGGAAGC CTCTCCCTAC GAACCATTTG ACCCGGAAAC GGAAATGACT
TGGGGTCAGA TGCAGGTGTT GGCTGATTTG GTTAAAAGTC AACCCTCCGG GTTCGGCAGT
TCGCAATCGA CGGTAACCGC CAAGACTGCG ACTGCCTCAC AGTCAACAGT CAACAGTCAA
CAGTCAACGG TCAATGGTCA ACAAAATAAA ATAGCTGTTG TGGCTACTGT TGGGGCGTTA
CAACCCCATT TACCACCACC AGATGCTTTT ATTCCTTTTT GCCTGACTCT GAAGCGGGGG
CTGGAATTTG ATTTAGAGAC CTTCAGTGAG AAGATTACCA TTTTGGGCTA TGAGCGTGTT
CCCTTGGTGG AAACAGAAGG TCAGTGGAGT CGGCGGGGGG ATATTGTGGA TGTGTTTCCC
GTTTCCTCAG AACTACCGGT ACGGTTGGAA TGGTTTGGGG ATGAAATCGA GCAAATTCGG
GAATTTGACC CCAATACTCA ACGCTCGGCG CTTGACAAGA TAACAGAGAT TGTGCTTACA
CCCACAAGCT TTACGCCTAT TATCACTACA GCCCTGGAGG AGAGTGCTGA GTATCAAGTC
CTAAGTGCTG ATTCAGAAAT TAATTCTGCA CTCATAGAAG GTAGTCGGCG GTTTTTGGGT
TTAGCTTTTG AGCGACCTGC ATCTGTTTTG GATTATTTAC CGGAAAATAC CTTAATTACA
ATTGATGAGC CAGAACAGTG TCATGCTCAT AGCGATCGCT GGGTGGAAAA TGCAGAGGAA
CAATGGTCCC TGGGAACAGG AGAAACGGAT CTGGGAAGTG TACAATTACC CAAAATTCAT
CGGTCTTTTG AGGAATGTTT GGCTGATGCG ACTCGATTTA AAACCTTATA TTTATCGGAA
CTATCGGAAG AAAATAGCGG GGTGAATTTA GCTAGTCGGT CTGTGCCGGT AACACCCCAT
CAATTTGCTA AACTGGCAGA CACATTAAGG CAAGAGCGCG ATCGCAATTT CTCGATTTGG
TTAATCTCGG CTCAACCTTC CCGTTCTGTT TCTCTATTAC AAGAACACGA TTGTCCGGCG
CAGTTTATCC CCAATCCCCG CGATTACCAA GCAATTGACA AGCTGCAAAT CAACCACACC
CCCGTAGCGT TGAAATATTC TGGTCTGGCG GAACTGGAGG GTTTTATTCT CCCTACCTAT
CGCCTAGCAG TCATCACCGA CCGGGAATTT TATGGTCAAC ACTCCCTAGC TACACCGAAT
TTTGTCCGTA AGCGTCGTCA GGCGGCTTCT AAACAAGTTG ACCCGAATAA GCTGCGTCCA
GGGGATTATG TCGTTCACAG GAGTCATGGA ATTGGTAAGT TTGTCAAGCT GGAGAGTCTG
ACAATTAACG ATGAAACCCG TGATTATATC GTTGTCCAGT ATGCTGACGG TCTTTTAAGA
GTAGCGGCTG ATCAAGTGGG TGCTTTATCT CGGTTCCGCG CTACGGGAGA TAAACCGCCA
GAACTGCATA AGATGACGGG AAAAGCTTGG GACAATACCA AAAACCGCGT CCGCAAAGCG
ATTAAGAAAT TAGCAGTAGA CTTGCTGAAA TTATATGCAG CGCGATCGCA ACAACAAGGT
TTCGCCTATC CCCAGGATAT GCCTTGGCAA GAGGAAATGG AAGATTCTTT CCCCTACCAA
GCCACAACCG ACCAGCTAAA AGCCGTCCAA GATGTGAAAC GGGACATGGA AAGCGATCGC
CCAATGGATC GCTTAGTTTG TGGTGATGTG GGTTTTGGGA AAACGGAAGT AGCGATTCGC
GCCATCTTCA AAGCAGTGAC CTCTGGTAAA CAAGTCGCTT TACTTGCACC AACTACCATC
CTCACCCAGC AACATTACCA CACCATTAAA GAACGCTTTG CCCCTTACCC TGTGAACGTC
GGCTTATTAA ATCGTTTTCG CACAGCCGAA GAACGGCGGA ACATTCAAAA GCGATTGGCG
ACTGGTGAGT TAGATATTGT GGTTGGGACA CACCAGCTTT TAGGTAAAAG TGTCAACTTC
AAAGATTTAG GACTGTTGGT CATAGATGAG GAACAACGCT TTGGGGTGAA CCAGAAGGAG
AAAATTAAGT CCTTGAAAAC CCAAGTTGAC GTATTGACTC TCTCCGCCAC CCCCATTCCC
CGCACCTTGT ATATGTCTTT GTCTGGGATT CGGGAAATGA GCTTGATTAC CACACCACCC
CCTACCAGAC GACCAATTAA AACCCATCTT TCACCCAGAA ACCCGGAAAG TGTCCGCAGT
GCTATTCGTC AAGAACTTGA CCGTGGCGGA CAGGTATTTT ATGTAGTTCC ACGGGTCGAT
GGGATAGAAG AGATTACAGC CAATCTGCGG GAGATGGTTC CCGGAGCCAG ATTTGCGATC
GCTCACGGGC AAATGGATGA GAGCGAGTTA GAATCAACTA TGCTCACCTT TAGTAATGGT
GATGCAGATA TTCTGGTATG TACCACAATT ATTGAATCTG GGTTAGATAT TCCCCGCGTC
AACACCATCT TAATTGAAGA TGCTCACCGC TTTGGCTTAT CCCAACTTTA CCAGTTACGG
GGAAGGGTAG GACGAGCAGG AATTCAAGCC CACGCCTGGC TATTTTACCC CAAACAACGA
GAACTATCTG ATGCCGCCCG GCAACGACTA CGAGCAATTC AGGAATTTAC TCAACTTGGT
TCCGGCTATC AACTAGCCAT GCGCGACATG GAAATCCGGG GTGTGGGTAA CTTGCTGGGT
GCAGAACAAT CAGGGCAAAT GGAAGCGATC GGTTTTGATT TATACATGGA AATGTTAGAA
GAATCAATCC GAGAAATTCG CGGTCAAGAA ATTCCCAAAG TTGACGATAC CCAAATTGAC
CTCAACCTCA CCGCTTTTAT CCCCGCCGAT TACATTACCG ACATTGACCA AAAAATGAGC
GCATATCGTG CGGTAGCGGC GGCTAAGTCC AAAGACGAAT TAACCCAGAT TGCAGCTGAG
TGGAGCGATC GCTATGGTAC TTTACCAGTC AGCGCCAATC AACTCTTGCG GGTAATGGAA
CTCAAACAAC TAGCGAAAAA GTTAGGTTTT AGCCGCATCA AACCAGAAAG TAAACAGCAC
GTTGTTCTAG AAACCCCAAT GGAAGAACCT GCATGGAATT TACTTGCGGC GAACTTACCA
GAACACCTGA AAACCCGGTT TGTTTATTCT CCAGGTAAAG TCACAGTCAG GGGTTTAGCA
GTCCTCAAAG CCGACCAACA ATTACAAAGT TTGATTGATG CGTTAGGGAG AATGCAGGGA
GCGATCGCAG AAGCAGCTAT TGTTTAA
|
|---|
| Protein sequence | MAFSSIVRAL ARSPLTTELL SKLNRQQDLR LNGIPRLPKG LVASALAQNS GNNLFVVCAT
LEEAGRAYAQ LEAMGWQTVH FYPTSEASPY EPFDPETEMT WGQMQVLADL VKSQPSGFGS
SQSTVTAKTA TASQSTVNSQ QSTVNGQQNK IAVVATVGAL QPHLPPPDAF IPFCLTLKRG
LEFDLETFSE KITILGYERV PLVETEGQWS RRGDIVDVFP VSSELPVRLE WFGDEIEQIR
EFDPNTQRSA LDKITEIVLT PTSFTPIITT ALEESAEYQV LSADSEINSA LIEGSRRFLG
LAFERPASVL DYLPENTLIT IDEPEQCHAH SDRWVENAEE QWSLGTGETD LGSVQLPKIH
RSFEECLADA TRFKTLYLSE LSEENSGVNL ASRSVPVTPH QFAKLADTLR QERDRNFSIW
LISAQPSRSV SLLQEHDCPA QFIPNPRDYQ AIDKLQINHT PVALKYSGLA ELEGFILPTY
RLAVITDREF YGQHSLATPN FVRKRRQAAS KQVDPNKLRP GDYVVHRSHG IGKFVKLESL
TINDETRDYI VVQYADGLLR VAADQVGALS RFRATGDKPP ELHKMTGKAW DNTKNRVRKA
IKKLAVDLLK LYAARSQQQG FAYPQDMPWQ EEMEDSFPYQ ATTDQLKAVQ DVKRDMESDR
PMDRLVCGDV GFGKTEVAIR AIFKAVTSGK QVALLAPTTI LTQQHYHTIK ERFAPYPVNV
GLLNRFRTAE ERRNIQKRLA TGELDIVVGT HQLLGKSVNF KDLGLLVIDE EQRFGVNQKE
KIKSLKTQVD VLTLSATPIP RTLYMSLSGI REMSLITTPP PTRRPIKTHL SPRNPESVRS
AIRQELDRGG QVFYVVPRVD GIEEITANLR EMVPGARFAI AHGQMDESEL ESTMLTFSNG
DADILVCTTI IESGLDIPRV NTILIEDAHR FGLSQLYQLR GRVGRAGIQA HAWLFYPKQR
ELSDAARQRL RAIQEFTQLG SGYQLAMRDM EIRGVGNLLG AEQSGQMEAI GFDLYMEMLE
ESIREIRGQE IPKVDDTQID LNLTAFIPAD YITDIDQKMS AYRAVAAAKS KDELTQIAAE
WSDRYGTLPV SANQLLRVME LKQLAKKLGF SRIKPESKQH VVLETPMEEP AWNLLAANLP
EHLKTRFVYS PGKVTVRGLA VLKADQQLQS LIDALGRMQG AIAEAAIV
|
|---|
| |