| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_2580 |
|---|
| Symbol | |
|---|
| ID | 3679604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 3188025 |
|---|
| End bp | 3189251 |
|---|
| Gene Length | 1227 bp |
|---|
| Protein Length | 408 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637717927 |
|---|
| Product | TPR repeat-containing protein |
|---|
| Protein accession | YP_323090 |
|---|
| Protein GI | 75908794 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 0.151765 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTAAGGC GCTTAAGTCT CTTTATTACG ACTGTGATTA TTTGGCAACT TACCAGTTCT
GTAACTCTAG CCAGGAGTAA CGATCCTCAA CAAGCAGACA GGTTTCCTCC TAGTCCATTG
GAAATTACTA AGCCTGATCC GCTTGTACCC ACTTTGCGAG ATAAACAGCA GTTAACTGTT
CCAGAAAGAC AAAAGTTGGA AGCGGCGCTA GATGAGTTGA ATCAACAAGC AACGGCAAAG
TTGCAAGCTG GGGATAATTT AGGGGCGTTT GAAATTTGGA ACCGTGAACT ACGCTTGCGC
CGTTATTTAG GGGCTGTTAC TGAAGTAAAA GCCCTGTCGC GGGTTGGTGA GATTGCATGG
AATCAAAACG ATAGCCAAGA GCTACTATAT ATTACTCAAA GATTACAAGC AATTCAAAAA
CAGGTACAAC TGCAAAACAA AAATGTGCAG CAAAGTGTTG ACTTACCACT ACTACAAGCC
TTGGGCGAAG CTTATCAGAA AGTGCGATCG CTAAAAGGTG CCATTACAGT TTATAGCGAA
GTTTTAGCCA CAGTTCGGGA AAAACAAGAT TTAGTTGCCC AAGTAAATAC TCTCACAACC
ATAGGGGAAC TCAATCTCAA TTGGTTTGAT TATCCCCAAG CTGCTACCGC CTACGAGGAG
TTGCTTAGAT TAGCTACCTC TGGGGGTGAA AATCAAAATC AAGAGTTCAC ATACTTGCAA
AAGCTAGCTT ATATTTATCA ACAGTCTAAG CAAGCACAAA AATCTATTGA TGTTTTAAAC
AAAATAAAAG CTATTTATTC CCAGAATAAT AATTTTACTC AATTGCCAAC CTTACAGCTA
GCGATCGCCG CTAATTATGA AACTTTAGCG CGAGAAAATC CTGCTTTAAT CGAAGCAGCT
TTTAAAAACT ATCAAGAAGC TTATATAACT GCATGGCAAT TGCAACAGTA TCCTAGTGCG
GCGGAAGCTG TACAGAAATT AATCTCACTG TACCGTTCTC AAGGACAGCT AGATGAAGCT
TTGCAAGCCA GCGAAATTCT TTTAGAAATA CAAACACGAG CCGTCAATTT TTATGGTTTG
ATGGAGGCTT ACGACCAAAT AGGGAAATTA TACTTAGAGC GGAAAGACTC CTCAGCCGCA
CTCGCAGCAT TTCAAAAGGG TTTAGAACTG GCGAGACAAT TAAAACATCA AGAAGCTTAT
TTCACACAGC AAATTAACAG TATTTAA
|
|---|
| Protein sequence | MLRRLSLFIT TVIIWQLTSS VTLARSNDPQ QADRFPPSPL EITKPDPLVP TLRDKQQLTV
PERQKLEAAL DELNQQATAK LQAGDNLGAF EIWNRELRLR RYLGAVTEVK ALSRVGEIAW
NQNDSQELLY ITQRLQAIQK QVQLQNKNVQ QSVDLPLLQA LGEAYQKVRS LKGAITVYSE
VLATVREKQD LVAQVNTLTT IGELNLNWFD YPQAATAYEE LLRLATSGGE NQNQEFTYLQ
KLAYIYQQSK QAQKSIDVLN KIKAIYSQNN NFTQLPTLQL AIAANYETLA RENPALIEAA
FKNYQEAYIT AWQLQQYPSA AEAVQKLISL YRSQGQLDEA LQASEILLEI QTRAVNFYGL
MEAYDQIGKL YLERKDSSAA LAAFQKGLEL ARQLKHQEAY FTQQINSI
|
|---|
| |