| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_2044 |
|---|
| Symbol | |
|---|
| ID | 3680985 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Anabaena variabilis ATCC 29413 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007413 |
|---|
| Strand | + |
|---|
| Start bp | 2528942 |
|---|
| End bp | 2529418 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637717389 |
|---|
| Product | TspO and MBR related proteins |
|---|
| Protein accession | YP_322561 |
|---|
| Protein GI | 75908265 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3476] Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 0.0850027 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 0.66008 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAAAGCGA GATGGATCAT CACAGCAGTT TCAGCAGCAT TGTTTTTTGG TGGTAGCCTA
TTTACATCAC TGCGCGACCC CTGGTTTCAA AACTTACAAC GTCCCGACTG GCTAACCTTT
GAATTTCTCA TCCCATTTAT TTGGACGTTT ATTTGGGCTT GTACAACCAT TTCTGCGATT
ATTGTTTGGG AAAAAAGGAC AAGACAGGGC TTTCGACCTT GGTATTTGAT GGCTATTTAT
GCAGCGATCG CCATATCCAC CTCCGCCTAC AGTCCTATTG TAGTAGAACT GCGGAGCTTA
ACAGGGGGAA TATTTATGGG TGGATTGGCA ACGCTACTCG TCTATATTTT AGCCTTCCTA
GTCAAGCCTA TTTCCCCCAA AGCCTCTTGG TTATTCCTTC CCTACGCCCT CTGGGGACCC
TTTGGTACTT ATCTAACTTG GTTATTACTC CAACTAAATC CCGGTGTAGC CAATTAA
|
|---|
| Protein sequence | MKARWIITAV SAALFFGGSL FTSLRDPWFQ NLQRPDWLTF EFLIPFIWTF IWACTTISAI
IVWEKRTRQG FRPWYLMAIY AAIAISTSAY SPIVVELRSL TGGIFMGGLA TLLVYILAFL
VKPISPKASW LFLPYALWGP FGTYLTWLLL QLNPGVAN
|
|---|
| |