Gene Ava_1578 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_1578 
Symbol 
ID3681121 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp1949489 
End bp1950283 
Gene Length795 bp 
Protein Length264 aa 
Translation table11 
GC content43% 
IMG OID637716918 
Productisochorismatase hydrolase 
Protein accessionYP_322096 
Protein GI75907800 
COG category[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG1335] Amidases related to nicotinamidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value0.488451 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATCAGT CTTTACGCAC ATTGGGAGTA GCGCCAAATG CTTGGATGGT GAATCAAGCG 
ATCGCAGATA TCACTCGTCC GCAAAAGACC CCACAACCCG TTATCTTATC AACAGAAACC
AAAACTCTGC GCCTAGACTT GGCAAAAACA GCCATTATTG TCATAGATAT GCAAAACGAC
TTCTGTCACC CAGATGGTTG GTTAGCCCAT ATCGGCGTAG ATGTGACACC AGCAGCTAAA
CCCATCGTAC CTTTAAATAA TTTACTGCCA GAATTGCGTG CGGTTGGTGT GCCTGTAATT
TGGTTAAATT GGGGCAATCG TCCCGACTTA CTGAACATTA GCGCCAATTT ACTTCATGTT
TACAATCCTA CAGGAGAGGG GGTGGGGTTA GGCGATCGCT TACCCAAAAA CGATGCTAGA
GTACTGATGG CAGGTAGTTG GGCGGCAGCA GTCGTAGACG AACTCCAGCA ATTACCACAA
GACATTTGTG TGGATAAATA CCGCATGAGT GGCTTTTGGG ACACACCTTT AGATAGTATT
TTAAAAAACC TGGGAATTAC AACAATATTG TTTGCTGGCG TTAACGCTGA TCAATGCGTA
CTGACTACCT TATGTGATGC TAACTTCTTA GGATACGACT GTATTTTAGT CAAAGATTGT
ACTGCTACAA CTTCTCCCGA TTATTGTTGG TTAGCGACCT TATATAACGT TAAACAATGC
TTTGGTTTTG TTAGTGATTC ACAAGCAATT TTCACAGCCC TAAATCACCC TGAAGCCACA
GGAAGGGATA AATAA
 
Protein sequence
MDQSLRTLGV APNAWMVNQA IADITRPQKT PQPVILSTET KTLRLDLAKT AIIVIDMQND 
FCHPDGWLAH IGVDVTPAAK PIVPLNNLLP ELRAVGVPVI WLNWGNRPDL LNISANLLHV
YNPTGEGVGL GDRLPKNDAR VLMAGSWAAA VVDELQQLPQ DICVDKYRMS GFWDTPLDSI
LKNLGITTIL FAGVNADQCV LTTLCDANFL GYDCILVKDC TATTSPDYCW LATLYNVKQC
FGFVSDSQAI FTALNHPEAT GRDK