Gene Ava_0950 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_0950 
Symbol 
ID3681170 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp1145225 
End bp1147555 
Gene Length2331 bp 
Protein Length776 aa 
Translation table11 
GC content46% 
IMG OID637716284 
Productpenicillin-binding protein 1A 
Protein accessionYP_321469 
Protein GI75907173 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones18 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGCCACCTA GTAATCGTTA CGAGCAAGAG GAAACCACAA ACGAGAACTT ACCGCCAACG 
CAGGTGGTAA GACAAAGAAA ATTATTAAAC CAGATAAGTG GTATAACATC TGGGATTGTT
ACTAGGTTTA CAAGCCGTGA ACGCCCAATT TATCGCCGTG TATGGTTTTG GGCGGGCTTA
AGTGTAGGCG GTGGCATCAT TGCCTTCAAC TACTTATTAG GGGAAATTGA TAAAACTTTA
CCTGATAAAG CGGAATTGCA AGCTGTCGTC CGTGAGCAAA CAATTACCAT CAAAGCTGTT
GATGGCACTA TATTACAACA GCAAGGCGAA GCAACCAGAG AAAAAGTCAA TCTGGAGAAG
ATGCCTGAGA TCCTCAAAAA AGCTTTTATT GCCTCCGAAG ACAGCAGATT CAGTCAGCAC
CAAGGTATTG ACCCCCAAGG GATTGTCAGA GCAGCCGTCA ATAATTTGCG ATCGCAAAAT
GTGGTAGAAG GTGGTAGCAC GATTACTCAA CAGTTATCAC GGATTCTTTT CCTCAAACAA
GAGCGTACAG TTTGGCGCAA ACTCAAGGAA GTACGCCTTG CCCAAAAGCT AGAACAAGAA
TTAACCAAAG ACCAGATTTT AGAGCGTTAT TTAAATTTGG TATATTTAGG TGCAGGGGCT
TACGGTGTAG CAGATGCAGC CTGGGTTTAC TTTAGTAAAC CAGTAGACCA ACTTACCCTC
CCGGAAGCGG CAACAATCGC GGGAATGCCC CCTGCACCGA GCTTATTTTC ACCAGACAAA
AACCCAGAAG CAGCCAAACA ACGACGAAAT TTGGTATTGC AACGGATGGA AAAAGAGGGC
TTTATTACAC CAGCCCAAAG GCAAGAAGCC ACTCAAGCAG CAATTACCCT CAAACCTAGT
TTACCCAAGC GGTTACAAGT AGAATCCCCC TACTTCACCA GCTATATTCA GCAAGAATTA
CCCAAGTATG TTTCCCCCCA AGTGTTAGCA AATGGGGGTT TAACTGTGGA AACTAGCTTA
AACCCAACTT GGCAGCAAGC CGCAGAAGCA GCCGTTGCTA AAACTTTACG CAATCAAGGA
CGATGGCAAA ACTTCAAACA AGCAGCTTTA GTCGCCATTG ACCCCCGTAA TGGGGAAATT
AAGGCAATGG TTGGGGGTCA GGACTTTGGT AAAAACCAAT TTAACCGTGT TACCCAAGCA
CAACGTCAGC CAGGTTCTAC ATTTAAAGGT TTTGTCTATG CGACTGCGAT CGCCACTGGC
AAAAACCCCT ACGATACTTA TGTAGATGCT CCCTTGGTAG TCGATGGTTA CGAACCGAAA
AACTACGGGG AAACCTTCCG AGGCACAATG AATATGCGCG ATGCCCTCAC CCGTTCGGTG
AATGTGGTAG CGTTGAAAGT CATGCTAGAT GTAGGATTTG AGCCAACAAT TCAACTAGCC
AAGAACATGG GGATTAAATC AAAACTCAAT CCTCATTATT CTCTAGCCCT TGGTTCTAAT
GAAGTCAATC TCTTAGAGTT AACCAGTGCT TACGGCAGTT TTGCCACCCA AGGTTTACAC
TCGGAACCTC ATGGCATCCG TCGTATCCTC AACCGCAAAG GCGAGGTCAT CTGGTCAGCA
AAATTTGACT CGAAGCGAGT GCTTGATCCT ACTAGTGCCG CTATTATGAC CTGGATGTTG
CGTAACGTGG TCGAAGCAGG CACAGGTGCA GCCGCCCAAC TGCCTAATAG ACCCGTTGCT
GGTAAGACAG GCACATCTGA TGAAGCCCGC GATTTATGGT TTATTGGCTA TATTCCCCAA
GTAGTTACAG GGGTTTGGTT AGGTAACGAT AATAATCGTC CTACTTATGG TAGTAGTGGC
AGTGCTGCTT ACACTTGGCA TGAATTTATG GAAAAAGCTG TAGAGGGAAT GCCAATAGCA
AAATTTCCCG AAAGACCAAA ACTGGAAGGT CGCAAAGGCA GTATTAAAGC AAAACCCATC
AAAGCCAAAC AAATTCTCAA TCGTCCTCTG ACACCTAATG AAGAATCAGT GCAAGAGACT
GGTTCATCAA CCAGACGCAG AAGACGCTCC CAACGATTAG AAGAAACCAC TCCCACTGAT
TCACCTAGAA GACGTAGACG ATATCGTAGC CAAGAATCAG TTTCTAGTGG TAGTGAAGAA
TCACCCCGTA GAAGACGGCG CAGAGCAGTT GTAGAATCAG ATACTTCAGA ACCAACCCGC
AGGTCTCGAC GGTCTTCATC CACAGTAGAT AATAGTTCTG GCTCAGCAAG TTCTGCACCA
ACACCTTCCT GGCGGGAAAG ACTTAGACCT AAGTCATCTT CTTCTAACTA A
 
Protein sequence
MPPSNRYEQE ETTNENLPPT QVVRQRKLLN QISGITSGIV TRFTSRERPI YRRVWFWAGL 
SVGGGIIAFN YLLGEIDKTL PDKAELQAVV REQTITIKAV DGTILQQQGE ATREKVNLEK
MPEILKKAFI ASEDSRFSQH QGIDPQGIVR AAVNNLRSQN VVEGGSTITQ QLSRILFLKQ
ERTVWRKLKE VRLAQKLEQE LTKDQILERY LNLVYLGAGA YGVADAAWVY FSKPVDQLTL
PEAATIAGMP PAPSLFSPDK NPEAAKQRRN LVLQRMEKEG FITPAQRQEA TQAAITLKPS
LPKRLQVESP YFTSYIQQEL PKYVSPQVLA NGGLTVETSL NPTWQQAAEA AVAKTLRNQG
RWQNFKQAAL VAIDPRNGEI KAMVGGQDFG KNQFNRVTQA QRQPGSTFKG FVYATAIATG
KNPYDTYVDA PLVVDGYEPK NYGETFRGTM NMRDALTRSV NVVALKVMLD VGFEPTIQLA
KNMGIKSKLN PHYSLALGSN EVNLLELTSA YGSFATQGLH SEPHGIRRIL NRKGEVIWSA
KFDSKRVLDP TSAAIMTWML RNVVEAGTGA AAQLPNRPVA GKTGTSDEAR DLWFIGYIPQ
VVTGVWLGND NNRPTYGSSG SAAYTWHEFM EKAVEGMPIA KFPERPKLEG RKGSIKAKPI
KAKQILNRPL TPNEESVQET GSSTRRRRRS QRLEETTPTD SPRRRRRYRS QESVSSGSEE
SPRRRRRRAV VESDTSEPTR RSRRSSSTVD NSSGSASSAP TPSWRERLRP KSSSSN