Gene Ava_0852 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAva_0852 
Symbol 
ID3681753 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAnabaena variabilis ATCC 29413 
KingdomBacteria 
Replicon accessionNC_007413 
Strand
Start bp1039129 
End bp1041312 
Gene Length2184 bp 
Protein Length727 aa 
Translation table11 
GC content45% 
IMG OID637716186 
Productlipopolysaccharide biosynthesis 
Protein accessionYP_321371 
Protein GI75907075 
COG category[D] Cell cycle control, cell division, chromosome partitioning
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0489] ATPases involved in chromosome partitioning
[COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis 
TIGRFAM ID[TIGR01007] capsular exopolysaccharide family 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0448301 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGAAAAG GCATTTCAAC CTTATTGGGG GTCTTGGGAC GCAGAGGCTT TCCGGCGGTG 
ACTGTGTTTG CATCTGTCAT CGGAGCATCA TTTGCTTACT TGGCGGTGAC ACCACGTTTG
TATGAAACAT CAGCACGATT GATGTTGGAT GATAAAAAGG CGAGTGTGTC TGAATTGGGG
CGTGACTTGA CCCAGATAAA CTCTACAGCC ATTGGACGTA ACCCCTTAGC AGATCAGGCA
GAGTTACTGA AGTCACAAAC AGTCTTGCAA CTAGCTATTT CTAAACTCAA TCCGCCGATA
AAAGATAGTT CCACACAAAA ACCACTAACA GCTTCGGATA TTCGCTCAAA TTTGAAAGTG
ATTATAGTCC CAGCGACTAA CATTTTAGAT TTGAGATATC AAAGTCCCAA TCCAAATCAA
GCAGCGCAGA TTCTCAATGC TGTATCCCAG GCGATGGTGG AGGAAAATAT CAAAACCATC
AGTTCTGAAG CTACTAAGGT CAGGGAATTT TTGGCCGAAA AAGTACCTAT AGCGCGTCAA
AGGCTACTAC AAGCAGAACT CGCGGAAACC AAATACAGAC AGCAAAGCGG CGTTGTCGCC
ACAGATGATC AGACCAGGAG TTTGGTAAAT AGTTTAGCGG AACTGGAAAA TCAAGAACGC
ATCTTGGCGG TGCAACTCCA AGAGACGCGA TCGCGTGACG CATCTTTACG CCAAGTGACA
GATGCGAAAA ATATCAATAC CGCTTATGCC TCTGTCAGAG AAGGGCAAGA CGAACAACTC
AAGGTATTGC GAACTAAGTT AACTGATATC GAAACCAAAC TCATAGAAGC GCGTACCAAA
TATCAAGAAG CCCATCCCAC AGTTTTGGAT CTAGTCCAAC AAAGGGATGA AATCCGGGCT
TTGTATGGAC AGCAAATGGC TAGGGTATCT TCTAGTAACC AAACAGCTAA TTTCAACAAT
TTATCTAATG ACCAAATTAG TCAAACCCTT ATTTCTGATT TAATCACGAA CGATATTACG
CGTTTAGCCG TAGAAAATAA GCTGAATGCT ATCCAGAAAA TGAGAGCTAA TATTCAAAGT
CGTTTGGCAC TCATCCCCAT TCAACAGCAA CCGTTAACCG TCTTGACACG TCAACGGGAA
GAAGCCGCCG AATCACTGAA GTTTCTCCAA AGCAAACTAG AAGAAGCGCA GATTGCGGAG
GCGCAGAAAG TTAGCAACAT CCGCATCATC GAAACGGCTG TAGCCCCAGA GTTACCCACA
TCTCCGAAAC GTACAGTAGT ACTTGTGATT GCTGGGTTCT TTGGCAGCAT CTTAGCGGTA
GGGTTGGTAT TGCTACTGGA ACTCATGGAT AATACTCTGC GCGATGCGAC AGAAGCGGAG
GAGTTACTGC AATTACCATT GTTGGGAGTT TTACCCCGTC TTCCTGCTAC CAAACTGAGT
CTAGAACCGG CAGAACAATT TCTTGATGAC TTGGGTTTGG TGGAACCTTA CCGGATGCTG
CTGAAGAATC TAGAGTTTCG CAATGTGGAC AATTTGCAGG TAATAGTTGT CAGCAGCCCC
CTGGCTGGAG AAGGTAAGTC AGTTATTGTT TCCCATCTGG CTGCGGTCTC TGCCATGTTA
TCTCGACGGA CATTAATTAT TGATGCAGAT TTGCGTAAAC CCTCACAACA TACCTTATTT
AATCTACCTC CCAGACCAGG AATTACAGAT GTAATTGATG GGACTAGACC TTTACTCAGT
GCGGTGCAGT CAACAACCAT AGAAAATCTT TCGGTGTTGA CTTGCGGAGA GTTAAGGGGA
AGACCTTCCC AGATCCTAGA GTCAGCAGCG ATGAAAGCGC TAGTGGCAGA AGCAGCCCAA
CGCTACGATT TAGTCATTAT TGATACTCCA CCCTTGAGCG CCTGCGCTGA TGCTTCCACC
TTGAGTCAGA TGAGTGATGG AGTCATCCTC ACCACACGCC CCGGTTTTAC CCTGAAGGAG
GTATTACAAC GAGCCGTATC AGAACTCAAC CAAAATCGCA TTCCCGTTTT GGGGGTAGTG
GTCAATGGTA TGACAAGTGG TACAGAAAAA TACTACCGTT ACCCATCAGA GGAATATCCC
TCGATATTAT CTAGACCTTT GAGACGTTTA ACATCTCTGG GTAGTAGCGC CAGAAATTCC
GCTAATGATT CTAGGTCGAA CTGA
 
Protein sequence
MGKGISTLLG VLGRRGFPAV TVFASVIGAS FAYLAVTPRL YETSARLMLD DKKASVSELG 
RDLTQINSTA IGRNPLADQA ELLKSQTVLQ LAISKLNPPI KDSSTQKPLT ASDIRSNLKV
IIVPATNILD LRYQSPNPNQ AAQILNAVSQ AMVEENIKTI SSEATKVREF LAEKVPIARQ
RLLQAELAET KYRQQSGVVA TDDQTRSLVN SLAELENQER ILAVQLQETR SRDASLRQVT
DAKNINTAYA SVREGQDEQL KVLRTKLTDI ETKLIEARTK YQEAHPTVLD LVQQRDEIRA
LYGQQMARVS SSNQTANFNN LSNDQISQTL ISDLITNDIT RLAVENKLNA IQKMRANIQS
RLALIPIQQQ PLTVLTRQRE EAAESLKFLQ SKLEEAQIAE AQKVSNIRII ETAVAPELPT
SPKRTVVLVI AGFFGSILAV GLVLLLELMD NTLRDATEAE ELLQLPLLGV LPRLPATKLS
LEPAEQFLDD LGLVEPYRML LKNLEFRNVD NLQVIVVSSP LAGEGKSVIV SHLAAVSAML
SRRTLIIDAD LRKPSQHTLF NLPPRPGITD VIDGTRPLLS AVQSTTIENL SVLTCGELRG
RPSQILESAA MKALVAEAAQ RYDLVIIDTP PLSACADAST LSQMSDGVIL TTRPGFTLKE
VLQRAVSELN QNRIPVLGVV VNGMTSGTEK YYRYPSEEYP SILSRPLRRL TSLGSSARNS
ANDSRSN