Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_0852 |
Symbol | |
ID | 3681753 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | - |
Start bp | 1039129 |
End bp | 1041312 |
Gene Length | 2184 bp |
Protein Length | 727 aa |
Translation table | 11 |
GC content | 45% |
IMG OID | 637716186 |
Product | lipopolysaccharide biosynthesis |
Protein accession | YP_321371 |
Protein GI | 75907075 |
COG category | [D] Cell cycle control, cell division, chromosome partitioning [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0489] ATPases involved in chromosome partitioning [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
TIGRFAM ID | [TIGR01007] capsular exopolysaccharide family |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 8 |
Fosmid unclonability p-value | 0.0448301 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGAAAAG GCATTTCAAC CTTATTGGGG GTCTTGGGAC GCAGAGGCTT TCCGGCGGTG ACTGTGTTTG CATCTGTCAT CGGAGCATCA TTTGCTTACT TGGCGGTGAC ACCACGTTTG TATGAAACAT CAGCACGATT GATGTTGGAT GATAAAAAGG CGAGTGTGTC TGAATTGGGG CGTGACTTGA CCCAGATAAA CTCTACAGCC ATTGGACGTA ACCCCTTAGC AGATCAGGCA GAGTTACTGA AGTCACAAAC AGTCTTGCAA CTAGCTATTT CTAAACTCAA TCCGCCGATA AAAGATAGTT CCACACAAAA ACCACTAACA GCTTCGGATA TTCGCTCAAA TTTGAAAGTG ATTATAGTCC CAGCGACTAA CATTTTAGAT TTGAGATATC AAAGTCCCAA TCCAAATCAA GCAGCGCAGA TTCTCAATGC TGTATCCCAG GCGATGGTGG AGGAAAATAT CAAAACCATC AGTTCTGAAG CTACTAAGGT CAGGGAATTT TTGGCCGAAA AAGTACCTAT AGCGCGTCAA AGGCTACTAC AAGCAGAACT CGCGGAAACC AAATACAGAC AGCAAAGCGG CGTTGTCGCC ACAGATGATC AGACCAGGAG TTTGGTAAAT AGTTTAGCGG AACTGGAAAA TCAAGAACGC ATCTTGGCGG TGCAACTCCA AGAGACGCGA TCGCGTGACG CATCTTTACG CCAAGTGACA GATGCGAAAA ATATCAATAC CGCTTATGCC TCTGTCAGAG AAGGGCAAGA CGAACAACTC AAGGTATTGC GAACTAAGTT AACTGATATC GAAACCAAAC TCATAGAAGC GCGTACCAAA TATCAAGAAG CCCATCCCAC AGTTTTGGAT CTAGTCCAAC AAAGGGATGA AATCCGGGCT TTGTATGGAC AGCAAATGGC TAGGGTATCT TCTAGTAACC AAACAGCTAA TTTCAACAAT TTATCTAATG ACCAAATTAG TCAAACCCTT ATTTCTGATT TAATCACGAA CGATATTACG CGTTTAGCCG TAGAAAATAA GCTGAATGCT ATCCAGAAAA TGAGAGCTAA TATTCAAAGT CGTTTGGCAC TCATCCCCAT TCAACAGCAA CCGTTAACCG TCTTGACACG TCAACGGGAA GAAGCCGCCG AATCACTGAA GTTTCTCCAA AGCAAACTAG AAGAAGCGCA GATTGCGGAG GCGCAGAAAG TTAGCAACAT CCGCATCATC GAAACGGCTG TAGCCCCAGA GTTACCCACA TCTCCGAAAC GTACAGTAGT ACTTGTGATT GCTGGGTTCT TTGGCAGCAT CTTAGCGGTA GGGTTGGTAT TGCTACTGGA ACTCATGGAT AATACTCTGC GCGATGCGAC AGAAGCGGAG GAGTTACTGC AATTACCATT GTTGGGAGTT TTACCCCGTC TTCCTGCTAC CAAACTGAGT CTAGAACCGG CAGAACAATT TCTTGATGAC TTGGGTTTGG TGGAACCTTA CCGGATGCTG CTGAAGAATC TAGAGTTTCG CAATGTGGAC AATTTGCAGG TAATAGTTGT CAGCAGCCCC CTGGCTGGAG AAGGTAAGTC AGTTATTGTT TCCCATCTGG CTGCGGTCTC TGCCATGTTA TCTCGACGGA CATTAATTAT TGATGCAGAT TTGCGTAAAC CCTCACAACA TACCTTATTT AATCTACCTC CCAGACCAGG AATTACAGAT GTAATTGATG GGACTAGACC TTTACTCAGT GCGGTGCAGT CAACAACCAT AGAAAATCTT TCGGTGTTGA CTTGCGGAGA GTTAAGGGGA AGACCTTCCC AGATCCTAGA GTCAGCAGCG ATGAAAGCGC TAGTGGCAGA AGCAGCCCAA CGCTACGATT TAGTCATTAT TGATACTCCA CCCTTGAGCG CCTGCGCTGA TGCTTCCACC TTGAGTCAGA TGAGTGATGG AGTCATCCTC ACCACACGCC CCGGTTTTAC CCTGAAGGAG GTATTACAAC GAGCCGTATC AGAACTCAAC CAAAATCGCA TTCCCGTTTT GGGGGTAGTG GTCAATGGTA TGACAAGTGG TACAGAAAAA TACTACCGTT ACCCATCAGA GGAATATCCC TCGATATTAT CTAGACCTTT GAGACGTTTA ACATCTCTGG GTAGTAGCGC CAGAAATTCC GCTAATGATT CTAGGTCGAA CTGA
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Protein sequence | MGKGISTLLG VLGRRGFPAV TVFASVIGAS FAYLAVTPRL YETSARLMLD DKKASVSELG RDLTQINSTA IGRNPLADQA ELLKSQTVLQ LAISKLNPPI KDSSTQKPLT ASDIRSNLKV IIVPATNILD LRYQSPNPNQ AAQILNAVSQ AMVEENIKTI SSEATKVREF LAEKVPIARQ RLLQAELAET KYRQQSGVVA TDDQTRSLVN SLAELENQER ILAVQLQETR SRDASLRQVT DAKNINTAYA SVREGQDEQL KVLRTKLTDI ETKLIEARTK YQEAHPTVLD LVQQRDEIRA LYGQQMARVS SSNQTANFNN LSNDQISQTL ISDLITNDIT RLAVENKLNA IQKMRANIQS RLALIPIQQQ PLTVLTRQRE EAAESLKFLQ SKLEEAQIAE AQKVSNIRII ETAVAPELPT SPKRTVVLVI AGFFGSILAV GLVLLLELMD NTLRDATEAE ELLQLPLLGV LPRLPATKLS LEPAEQFLDD LGLVEPYRML LKNLEFRNVD NLQVIVVSSP LAGEGKSVIV SHLAAVSAML SRRTLIIDAD LRKPSQHTLF NLPPRPGITD VIDGTRPLLS AVQSTTIENL SVLTCGELRG RPSQILESAA MKALVAEAAQ RYDLVIIDTP PLSACADAST LSQMSDGVIL TTRPGFTLKE VLQRAVSELN QNRIPVLGVV VNGMTSGTEK YYRYPSEEYP SILSRPLRRL TSLGSSARNS ANDSRSN
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