Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Ava_0020 |
Symbol | |
ID | 3678865 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Anabaena variabilis ATCC 29413 |
Kingdom | Bacteria |
Replicon accession | NC_007413 |
Strand | + |
Start bp | 17810 |
End bp | 18580 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 637715347 |
Product | TPR repeat-containing protein |
Protein accession | YP_320541 |
Protein GI | 75906245 |
COG category | [S] Function unknown |
COG ID | [COG1357] Uncharacterized low-complexity proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAAACC TAATTTTTAT TGCTACTACT TTTATAACTA CAATTAGTTT GACCAATATT GCCCAAGCGG CAAATCAAGA ACATATTAGA CAGTTATTAG CGACTAAGCA ATGTCAAAAC TGTAACTTGA GTGGTGCTGG TTTAGTGATG GCTGACTTAA CTGGAGCCAA TTTAAGCGGC GCTAACCTTG CGGGTGCAAA TCTGAGCCGG GCAAACTTGA GTGGTGCTGA TTTGCGTGGT GCAAACTTAA GTGGTGCGGG TTTATTTGGG GTGAATTTGA GTGAAGCTAA ACTCGGTGGA GCAAATTTAG CCGGTGCTGA TTTAAGAAGC GCATTTTTAA GTAATGCCGA ATTTACTGGT GCATATTTGC AGGGAACTAA CTTTCAAGGT GCGTTAGGCA TACCATTGCA AATTGCGACA CCAGACGAAT TTTATGCTTT GGGTGTAGCT GAGGCACAAA AAGGCAATCA ACAACAGGCT ATTAACTATT TTAACCAGGC GATCGCATCT AAACCAGAAT ACGCTGGTGC ATATTTAGCC CGTGGTATTG CTAGATACCA GCTATTTGAC CGTCAAGGTG CTACCCAAGA TGCCCAAACT GCCGAAAAGC TCTTTACATC CCAAGATAAC GCCACAGGAA TACAAACAGC CCAAGCTTTC ATCAAAGAAT TACAAACACC ATACACAGAA AAAGTAAGTG CCGGTAAACC CAGTTTTTTC GACTTTTTAG GCAGTCTAGG TTCAGTACTG CTACAATTCT TACCATTTTG A
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Protein sequence | MKNLIFIATT FITTISLTNI AQAANQEHIR QLLATKQCQN CNLSGAGLVM ADLTGANLSG ANLAGANLSR ANLSGADLRG ANLSGAGLFG VNLSEAKLGG ANLAGADLRS AFLSNAEFTG AYLQGTNFQG ALGIPLQIAT PDEFYALGVA EAQKGNQQQA INYFNQAIAS KPEYAGAYLA RGIARYQLFD RQGATQDAQT AEKLFTSQDN ATGIQTAQAF IKELQTPYTE KVSAGKPSFF DFLGSLGSVL LQFLPF
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