| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Ava_C0117 |
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| Symbol | |
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| ID | 3677825 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Anabaena variabilis ATCC 29413 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007412 |
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| Strand | - |
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| Start bp | 138918 |
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| End bp | 146003 |
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| Gene Length | 7086 bp |
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| Protein Length | 2361 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637715200 |
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| Product | serine/threonine protein kinase and signal transduction histidine kinase with GAF and PAS/PAC sensor |
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| Protein accession | YP_320394 |
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| Protein GI | 75812777 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair
[R] General function prediction only
[T] Signal transduction mechanisms |
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| COG ID | [COG0515] Serine/threonine protein kinase
[COG3899] Predicted ATPase
[COG4585] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 37 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCACTC TGCCTGGTAT TGCTATCCAA AACAAAATAT ACGAAAGTTC CAATTCTCTA
GTGTACCGGG GCATTAGAGA GGATGGAGTA GAGATCGTCG TAAAAATGCT AAAGCTTGAT
TATCCCTCTC CCCAAGAACT AACCCGCTAC AGACAGGAAT ATAAAATTAT TCGCTCCCTG
AATCTGGAAG GAGTTATCAA GGCATACAGC CAGCAGGACT ATCAACGCAC TCTGGTGATT
CTCTTAGAAG ATTTTGGGGG AGAGTCCCTA GAAAAATGGA TGCAAAAGCG TCCAGATATT
TTCTGCCCGA TGCCTTTATC CACTTTTCTT GGTATTGCGA TCGCCCTTTG CGACATTCTG
GGCAGAATCC ATGCAGCCAA TATCATTCAT AAAGATATCA ACCCTGGAAA CATAGTCTTT
AATCTGGATA CTGGCGTTGT CAAAATTATT GATTTTGGGG TTGCGACCCA ATTTAACCGC
ACCAATCCGA CGTTCAAAAG TCCCCATGTG TTAGAAGGCA CGCTTGCCTA TCTGTCGCCA
GAGCAAACCG GGCGGATGAA TCGGATGCTC GACTATCGCA CCGATTTCTA CTCGCTGGGC
GTAACCTTCT ACGAACTGTT AACTGGACAG CTACCGTTCC CCACTCAAGA CATCCTAGAG
CTAGTTCATT GCCATATTGC CAAACCGCCG ATTCCTGTGC ATGAATTGAA CGCCACGATT
CCCAAACCTA TTTCAGGCAT AATTTTGAAG TTGATGGCGA AAAATGCGGA GGATCGCTAT
CAAAGTGCCT GGGGCATCAA AGCGGATCTA GAACGCTGCG CCGGGCAACT GGCAGAAATG
GGTCAGATCA ACGCTATGTC GTTGGGACTG CAAGATGTTT CAGAACAGTT TTGCATTCCT
CAGAAACTGT ATGGACGAGA AGTCCAGACT AAAGCATTAT TGGCGGCGTT TGACAGAGTG
GCTAGAAAAG AGACGTTTGG CGAAATTTGT CAACTAGAGT CAGGCATAGA AAATGCTCAA
TTCAATGTCG AACTCATGCT CGTTGCTGGT TATGCTGGCG TTGGCAAAAC AGCATTGGTG
CAAGAACTCT ATAAACCCAT CACAGCAAAG CACGGCTATT TCATATCGGG TAAATTTGAC
CAATTTAGGC GCAATATTCC CTACAGCGCC ATTGTGGATG CCCTGCAAAA GTTGGTGCAG
CAACTTCTGG GGGAACCGGA TGAGCAAGTG CAACAGTGGC AAGAGCGTCT ACTCACTGCT
TTAGGAAGCA ATGGGCAAAT CATCATAGAT GTCATTCCGG AAGTTGAATT AATTATTGGC
AAACAGCCAC CCGTACCCGA AGTTGGAGCA ACGGAAGCTC AAAATCGCTT TAATCGAATC
TTTCAAAATT TTGTGCGGGT GTTTTGTTCA AAAGAACATC CCCTGGTCAT CTTCTTAGAC
GATTTACAAT GGTCCGACTC CGCGACGCTG AAGTTAATCG AGTTAATATT ACTCGACGAG
CAAACCCATT ATCTATTTTT GATTGGAGCC TACCGAGACT CGGAAGTGCA TCCAACGCAT
CCACTAGTAT TAACGCTCTT AGAACTACGA AACCAAGGGG CAGTACTTCA GGAGATTACC
TTAGCACCCT TAACCCTCGA ACCCTTGAGT CAACTGATTG CCGAGACGCT AGGTCGCAAT
ATTGACACCG TTCGTTCTTT AGCCCAATTA GTGTTACGTA AAACCGAAGG CAACCCTTTC
TTTGTCGGTG AATTTTTGCG AATGCTGTAT AGCGAAAATC TGTTAATCTT TAATGCGAAA
CAGTTAAGCT GGCAGTGGGA TATTGCTCAA ATTCAAGCCC GAAATATTAC CGATAATGTA
GTGGAGTTGC TGCTGCTCCA GTTGAAGAAA TTGCCAAATG AAACACGGCA AATTCTCCGC
TTAGCCGCTT GTGTTGGATC TGAATTTGAT TTAGAGACGT TAGCGATCGC TTGTGAAAAA
TCGCCGAAAA TAATTTCTCT AGATTTACTA GCTGCAATAA ATGCTGGATT AATTCAACCT
CTATCTGAAT TAGACGAAAA CTTGTTAGTT CAAGACTACA AGTTTTTGCA CGATCGCGTT
CAGCAAGCGG CTTATGCTTT GATTGATGAA TCGCACAAAC AGGTTGTTCA TCTCCAAATC
GGTGGCAATT TGCTCGAAAA AACTTCACCA GAGCAACGAT CCGATCGGTT GTTTGAAATC
ATCGATCATC TCAATCAAGG ACTTGAGCTA GTCACTGCTC GATCAGAACG AACTGAAATT
GCCAGACTGA ATTTAATGGC AGGACAGAAA GCAAAGGCAG CAACGGCTTA TGAAGCAGCT
TTTAAGTATT TCACTACAGG GCTTAAACTC CTCAATTGGG AGAGTTGGCT CAGTGAGTAT
GACCTTACCT TAACGCTGTA CTCAGAAGCA GCAGAAGCGG CGTATCTCCA GGGTTGCTTT
GATGAGATGG AACAGTTGGT AGAAGTGGTA CTCGCTCGTG CCAAAACAGT GGTTGACAAA
GTGCAAGTTT ACGATAGCAG CATTCAAAGA TATTTGTCAC AGGGCAACCT GAAAGAAGCA
CTCAAAATTG GCTTGGAAGT GTTGAAGCTC CTGGGAGTGA TTTTACCAGA AAATCCAAGT
GAGTTAGATG TTCAAGGCGG ATTGGAGTCA ACGGCGGCAC TACTCGCCCA ACGAGAAATT
GAAGACTTGA GTAATTTACC AGAGATGACT GCACCAGAAC CGCTAGCAGC AATGTCAATC
CTAGCGAATA TAGGAGCTGC TGCATTCATA GTATCACCAG CACTATTCAT GCTGATTACT
TGCAAAACGG TAAATTTATC GATCAACTAC GGGAATGCTA TCTGGTCACC ACTGTATTAT
GCTGGCTACG GATTTGTTCT ATGTGGAGTT GTTCAAGACA TTGAACTCGG CTATAAATTT
GGTCAATTGG CTCTTAGTTT GGCAGAACGA TTGAATACCA AAAAAGGCAA GGCTAAAGCA
TTACAGTTAT TTAGTGACCA TGTTATGCAA TGGAAAGTAC ATCTTAAGGA GACGATACCA
CTGCTGGTTG AGGCTTATCA GGAAGGAGTG GAAACCGGAG ACTTTGAAAC CGCTGGTTAT
GCTGCATATG ACGTGTGCTA CAACTCGTTT TTCGTCGGTG AGTCACTCAC CCAACTAGAA
CAGAAAACTG CAACATATAG CAAAGCAGTT GATCGAATCA GACGGGAAAG CCCCTCGACT
TGGATTGCAA TAGTGTGGCA GACCATTCTT AATTTGTTAG ATAGGTCTCT TAATCCCAGT
CGCTTAGTTG GTCGGGTGTG TAATGAAGAG CAGGCATTAC CACACGCCCT TGCAGTTAAA
GATGGAACTG CAATTCAAAT GCTATATCTG CACAAAGTTA TACTGTGTTA TCTATTTGAA
GAATATCATC AAGCTGTACA GACTGCTATT TTGGCAAGGC AACATTTTGA AGAAGTGACA
GCAATAAAGG TTTTACCTGT ATTCTGTTTC TATCATTCTC TGACGCTTTT GAGCCTATTG
CTCGATGCTT CAAACTCTGA AAAATTAGCT TTGCTAAACT GCGTCAACAC CAACCAAGAA
AAGATGCAGA AATGGGCAGA ACACGCCCCA ATGAATTATC TACATAAATT TTATCTAGTC
GAGGCAGAGA AAGCACGAGT CTTAGGGCAA TTTCTTGAGG CTGAAGAACT TTACGAACAA
GCGATCGCAG GTGCTGCTGA AAATGAGTAT ATCCAGGAAG AAGCATTAAC TTATGAATTA
GCGGCTAAAC ACTATCTAGC GCGAGGTCGG TCAAAAATTG CTCAAACCTA CATGAAAGAG
GCGCACTATT GCTACGATCG CTGGGGCGCA ATCGCTAAAG TTAAAGACTT AGAAACTCGC
TATCCACAGT TCTTTTCTCA GTCGTCTAGA GCCGCTTCCA CATCAATTCC TACTACTGCT
GCAACTATCT CTAATCCCTT CCATACTGCT TTCGATTTAG CAGCAGTGAT GAAAGCTTCA
CAGGCGATTT CTCGTGAAAT TGAACTGAAG CAATTGCTGC GATCGCTGAT GCAAACTTTG
ATTGAGAATG CTGGCGCACA AACCGGATAT CTGATTTTAG AAAACTCAGA AGAATGGTCG
ATTGAAGCGG CTTGTGAACT CAATACCGAT GAGAATGCTT GTGCGACTCA GGTGTTACAG
TCTATTCCAA TTGCCGATCA ATTGCCAGAA TCAATCATTC AATATGTGAT TCGGACTCTA
AAGGCTGTCA CCTTAAATGA TGCGACTCGT GAAGGTGCTT TTATTAATGA GCCATACATT
CAACAGAACC AGCCTCAATC TATTTTCTGT TTGCCGCTGC TGAATCAAGC CAAGCTGGTC
GGTGTATTGT ATTTAGAAAA TCGGTTAGCA GCTGGAGTAT TTACACCAGA GCGATCGCAG
GTCTTGCAGC TATTATCGAC TCAAGCCGCG ATCGCCATCG AAAATGCCAA CCTTTACTCA
GAACTGCGGG CTAAGGAAAG CAAGATCACC CAGTTCCTCG AAGCGATTCC GGTGGGAATT
GCGATCGTGG ATGCCGAGGG TCGCCCTTAC TATACCAACC AATGCGGCAA TCAACTCACG
GGCAAAGAAA CTGATACTTC CATAGCACCA GAGCAGTTCT CAGAGGCTTA TCAGCTTTAT
GTAGCGGGAA CGGATCAAAT CTATCCAGCG GAGAGCTTGC CTATTGTGCG GGCATTAAGG
GGCGAACGCA TTAGGACTGA AGATATAGAA ATTCGTCGAG ATCATGTCTC AATTCTAATT
GAGGCACGGG GAACACCAGT TTTCGATCGA CAGGGCAATA TCACTTATGC GATCGCTACC
TTTCAGGACA TTACAGAGCG CAAACAAGCC GAGAAACTCC TGGCCGACTA CAACTGCACT
TTAGAGCAAC AGGTTGCAGA ACGAACTGCT GCTTTACGAC AGAGTGAGGC CAATTACCGT
AACCTGATTC AAACTGCGAA TTCAATCATC CTTCGCACGG ATAGGCAAGG ACGAATTCGA
TACATGAATG ACTATGGACT GAGCTTTTTT GGTTATGAGG AAGATCAGAT TTTAGGGCGT
ACCCTACTGG AAACAATCGT TCCAGAAACC GAAACATCTG GACGCGATCT CAAGCAGTTT
GTTCACGATC TGTTTCACAA TCTTGAAGCT CCCTTGCCTC AAGCTTACCT GCAAACCGAG
AATGAAAACC TTTGTCGAAA CGGTAGACGG GTTTGGATTG CCTGGTCGAA TCAAGCCATC
TTCAATGAAC AAGGAGATGT CGTTGAAATC TTATCGGTGG GCAATGACAC CACCCAGCGT
AGACAAGCAG AAGAGGCATT ACAACGCAGT GAAGCTAAGT TCCGCAATAT TTTTGAAAAC
TCACAGGTTG GCATCTTCCG CACCCGCCTC TCGGATGGAT TACTTCTCGA TGCCAATCAA
CGCTATGCCA ATCTGCTTGG CTTTGATTCA TCAGAGGAGA TGATTGGGCT TGAACACGCC
ACAGACTACT ATCTAAATAC CAGCGATCGC CAACAATTCC TTGAGGTGCT GAAGCGGGAT
CGGGAAGTGC GAAGCTATGA AGCACAGGGG CGAAAACGAG ATGGGACAGT GTTTTGGGGA
CTGTTCTCTG CTTATCTGAA TGCAGACGAT GACTACATTG AAGGGGTGAT TGCGGATATT
AGCGATCTCA AACAAACAGA AGCCGCTCTA CAAACGAGTG AAGAACGACT ACGCTTAGCA
TTAACCGCTT CAAATCAAGG ACTCTACGAT TTCGATTTAA AGACTGAAGA AAGAATTGTT
AACCCGGAAT ACGCTTTAAT GCTGGGCTAC GATCCAGCAA CATTCCACGA AACCATTCCT
GAATGGATTG CTCGTTTGCA TCCTGATGAC AGAGAATCAG TTGTCGCAAC CTACCGTGCT
TGTATTACTG GAGAAATCCC CAACTTTCAA GTAGAGTATC GCCTTCGTAC CCAGGATGGT
CAGTGGAAAT GGATTCGTTC TGTCGGCAAA ATTGTTACCT GGAATGAATC CGGTGAACCC
ATCCGAGCGT TGGGAGTTGT TACGGATATC AACGATCGCA AGCAAGCAGA AGCAGCATTG
CAAGCCTCTG AAGCAGAACT GCGGGCGCTC TTTTCAGCCA TTCCCGATCC ATTATTTGTA
TTCTCTGCTG AAGGGCGATT CCTTGAAATA ATGGTACTGG AACGAAATCT GCTATGGCAA
CCCTTTGAGG AGATGATTGG TAAAACTATG CATCAACTCG GAAGGGAAGA AGCTGATGAG
TTTCTAGGTT ATATTCAGCA GGTACTGAGA ACCCAACAAA TCCTCACAGT CGAGTATGGT
GCGTTTCTAA ATGGACGAGA AATGTGGTTT TCGGCTCGCA TTGCCCCAAT CAGCCACGAT
CAGGTGATTT GGCTGGTGCG AGATATTACG GCGCAGAAGC AAGCAGAAGA AGCCTCAATT
TTAGAAGAAC GTAACCGTAT GGCACGCGAA ATTCACGATA CACTCGCTCA GGCGTTTACA
GGGATTCTGG CTCAGGTCGG TGCTGCAAAA CAGGTGCTAA CGGATGATGT AGAAGCAGCT
CAGGCACACC TGGATCTGAT CAAAGAATTG GCACGAACTG GACTGACTGA AGCACGGCGA
TCGGTAATTG CGCTCCGTCC TCAGCTTTTG GAGGAGGGCA GTTTACAGAG CGCTCTCCAT
CGTCTCGTCG CTCAAATCAG GGCTGCTGCA ACTGACACCA CCTTATATTA TGAGATTGAG
GGTGCAGTGT ATTCTCTACC CACTGAAGTC GAGAATAACC TACTGCGGAT TGGGCAGGAA
GCCTTAACTA ATGCGATTAG ATACGCCAAT GCCGACGAAA TTCGAGTGGA GCTAGTCTAC
GATCGCGACC AGTTTTGCTT GCGCGTGAGA GACAATGGAC AGGGCTTTGG AGTTGGAAGT
ATTTCAGCCT CTGAGGGTTT TGGCTTACTC GGCATGAGCG AACGGGCAGA GCGCATCGGC
GCACAACTCA CGATTAGGAG TCAACCTGGA CAAGGAACAG AAATTATTGT CACCGTCAAC
CCTTGA
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| Protein sequence | MITLPGIAIQ NKIYESSNSL VYRGIREDGV EIVVKMLKLD YPSPQELTRY RQEYKIIRSL
NLEGVIKAYS QQDYQRTLVI LLEDFGGESL EKWMQKRPDI FCPMPLSTFL GIAIALCDIL
GRIHAANIIH KDINPGNIVF NLDTGVVKII DFGVATQFNR TNPTFKSPHV LEGTLAYLSP
EQTGRMNRML DYRTDFYSLG VTFYELLTGQ LPFPTQDILE LVHCHIAKPP IPVHELNATI
PKPISGIILK LMAKNAEDRY QSAWGIKADL ERCAGQLAEM GQINAMSLGL QDVSEQFCIP
QKLYGREVQT KALLAAFDRV ARKETFGEIC QLESGIENAQ FNVELMLVAG YAGVGKTALV
QELYKPITAK HGYFISGKFD QFRRNIPYSA IVDALQKLVQ QLLGEPDEQV QQWQERLLTA
LGSNGQIIID VIPEVELIIG KQPPVPEVGA TEAQNRFNRI FQNFVRVFCS KEHPLVIFLD
DLQWSDSATL KLIELILLDE QTHYLFLIGA YRDSEVHPTH PLVLTLLELR NQGAVLQEIT
LAPLTLEPLS QLIAETLGRN IDTVRSLAQL VLRKTEGNPF FVGEFLRMLY SENLLIFNAK
QLSWQWDIAQ IQARNITDNV VELLLLQLKK LPNETRQILR LAACVGSEFD LETLAIACEK
SPKIISLDLL AAINAGLIQP LSELDENLLV QDYKFLHDRV QQAAYALIDE SHKQVVHLQI
GGNLLEKTSP EQRSDRLFEI IDHLNQGLEL VTARSERTEI ARLNLMAGQK AKAATAYEAA
FKYFTTGLKL LNWESWLSEY DLTLTLYSEA AEAAYLQGCF DEMEQLVEVV LARAKTVVDK
VQVYDSSIQR YLSQGNLKEA LKIGLEVLKL LGVILPENPS ELDVQGGLES TAALLAQREI
EDLSNLPEMT APEPLAAMSI LANIGAAAFI VSPALFMLIT CKTVNLSINY GNAIWSPLYY
AGYGFVLCGV VQDIELGYKF GQLALSLAER LNTKKGKAKA LQLFSDHVMQ WKVHLKETIP
LLVEAYQEGV ETGDFETAGY AAYDVCYNSF FVGESLTQLE QKTATYSKAV DRIRRESPST
WIAIVWQTIL NLLDRSLNPS RLVGRVCNEE QALPHALAVK DGTAIQMLYL HKVILCYLFE
EYHQAVQTAI LARQHFEEVT AIKVLPVFCF YHSLTLLSLL LDASNSEKLA LLNCVNTNQE
KMQKWAEHAP MNYLHKFYLV EAEKARVLGQ FLEAEELYEQ AIAGAAENEY IQEEALTYEL
AAKHYLARGR SKIAQTYMKE AHYCYDRWGA IAKVKDLETR YPQFFSQSSR AASTSIPTTA
ATISNPFHTA FDLAAVMKAS QAISREIELK QLLRSLMQTL IENAGAQTGY LILENSEEWS
IEAACELNTD ENACATQVLQ SIPIADQLPE SIIQYVIRTL KAVTLNDATR EGAFINEPYI
QQNQPQSIFC LPLLNQAKLV GVLYLENRLA AGVFTPERSQ VLQLLSTQAA IAIENANLYS
ELRAKESKIT QFLEAIPVGI AIVDAEGRPY YTNQCGNQLT GKETDTSIAP EQFSEAYQLY
VAGTDQIYPA ESLPIVRALR GERIRTEDIE IRRDHVSILI EARGTPVFDR QGNITYAIAT
FQDITERKQA EKLLADYNCT LEQQVAERTA ALRQSEANYR NLIQTANSII LRTDRQGRIR
YMNDYGLSFF GYEEDQILGR TLLETIVPET ETSGRDLKQF VHDLFHNLEA PLPQAYLQTE
NENLCRNGRR VWIAWSNQAI FNEQGDVVEI LSVGNDTTQR RQAEEALQRS EAKFRNIFEN
SQVGIFRTRL SDGLLLDANQ RYANLLGFDS SEEMIGLEHA TDYYLNTSDR QQFLEVLKRD
REVRSYEAQG RKRDGTVFWG LFSAYLNADD DYIEGVIADI SDLKQTEAAL QTSEERLRLA
LTASNQGLYD FDLKTEERIV NPEYALMLGY DPATFHETIP EWIARLHPDD RESVVATYRA
CITGEIPNFQ VEYRLRTQDG QWKWIRSVGK IVTWNESGEP IRALGVVTDI NDRKQAEAAL
QASEAELRAL FSAIPDPLFV FSAEGRFLEI MVLERNLLWQ PFEEMIGKTM HQLGREEADE
FLGYIQQVLR TQQILTVEYG AFLNGREMWF SARIAPISHD QVIWLVRDIT AQKQAEEASI
LEERNRMARE IHDTLAQAFT GILAQVGAAK QVLTDDVEAA QAHLDLIKEL ARTGLTEARR
SVIALRPQLL EEGSLQSALH RLVAQIRAAA TDTTLYYEIE GAVYSLPTEV ENNLLRIGQE
ALTNAIRYAN ADEIRVELVY DRDQFCLRVR DNGQGFGVGS ISASEGFGLL GMSERAERIG
AQLTIRSQPG QGTEIIVTVN P
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