| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_2575 |
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| Symbol | |
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| ID | 3672551 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 2649152 |
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| End bp | 2651011 |
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| Gene Length | 1860 bp |
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| Protein Length | 619 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637711281 |
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| Product | ribonuclease II |
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| Protein accession | YP_316333 |
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| Protein GI | 74318593 |
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| COG category | [K] Transcription |
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| COG ID | [COG0557] Exoribonuclease R |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.103427 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCACGTCA TTTTCGAAGA AGACGGCCAT TTCAAGGCCG GCTCCATCCT GTCCGAAACC
GAGGCGACCG CGCAGGTCGA GTCGGCTTCG GGCAAGCGCA GCAAGGTCAA GGCCGCGGCG
ATCCTGCTGC GTTTTACCGC GCCGGCGCCG GAGGACGTGA TGAGCGCCGC GGAAAAGCTC
GGCGAGGAAC TCGACGCCGA CTTCCTGTGG GAAGCGGCCG GGAGCGAGGA GTTCGGCTTC
GAGCAACTGG CCGGGGAGTA CTACGGACAC GCGCCCAGCC CGGCGGAATC GGTCGCGCTA
TTGCAGAAGC TGCACGCCTC GCCGATCTAT TTCCACAAGA AGGGCAAGGG TCGCTACCGT
CCGGCGCCAC CGGAGACGCT CGCCGCGGCC AAGGCCGGCC TCGAGAAGAA GCGTATCGCG
GCCGAACGCC AAGCCTATCT CGCCCATGAA CTCGCGGCCT TCCGCCTGCC ACCCGAATAC
GCGTCGCTGA TTCCGCGCAT CCTGATCGCG CCGGACAAGA ACACGCTCGA ATACAAGGCG
CTCGAGGACG CCGCCGCCGC GACCGGACTG TCGCCGCTAA GGCTCGTCGA GCGGTGCGGC
GCGATCCCTT CGACGCTCGA TTTCCATTTG ATGAGCTTCC TGCTCGAATA TTTTCCGCGT
GGCACGGGCT TTGCGCCCGT GACGGAGCCG CTCGACCCGC CCGAGTTGCC GTCGAGCCCC
GTGCGAGCAT TCTCGATGGA CGACGAGGCG ACGACCGAGA TCGACGACGC CTTGAGCGTC
GCGTGGCACG ACGACGGCAG CGTGCGCGTG GGCATCCACA TCGCGGCGCC AGCGCTCGGC
ATCGCCCCCG GTTCCGAACT CGACCGCGTC GCGCGCGAGC GTTTGTCGAC CGTGTATTTT
CCGGGCGACA AGATCACGAT GCTGCCCGAG ACCCTGATCC ATCACTACAC GCTCGGCGAA
GCGCACGACT GCCCGGCGCT GTCGCTATAC GTCGACGTCG CCGCCGACCT GCGCGTGCTC
GGCACCGAAA CGCGACTCGA GATGGTGCAC ATCGCCGACA ACCTGCGCCA CGAAACGCTG
GAAATCGAAT TCAACGCGGA GACCCTGCGC AACCCGGCGG TCGCGGACTA CCCCTATCGC
CGCGAACTCG AATGGCTGCA CGACTTCGCC GCCGTTCTCG AAGCCGGCCG CGGCAAGACC
GACACGGTCG AGCGCGTCGA CTACAGTTTC AAGCTCGACG GCGACCGCAT CAGCATCGCG
CCGCGCAAAC GCGGCAGCCC GATCGACAAG GTCGTTTCCG AACTCATGAT CTTTGCCAAC
GCGCACTGGG GTGGCTGGCT CGCGGAAAAA CGCGTTCCCG GCATCTATCG CGCACAGGCC
AACGGCAAGA CGCGGATGAC GACCGCGCCC GACCCGCACG TCGGCCTCGG CGTCGACCAG
TACGCGTGGT CGACGTCGCC GTTGCGGCGC TATGTCGATC TCGTCAATCA GCGCCAACTC
ATCAGCCTTG TCCGCGACGA GGACCCGGTT TACCCGCCGC GCAGCGAGGC GCTGTTTTCA
GTGGTGCGCG AATTCGAGCT CGCCTACGAC GCCTACAACG ATTTCCAGCG CCGCCTCGAG
CGCTACTGGA TGTTGCGCTG GCTGATCCAG GAAAACGTCG ACGAAATCGT CGCCAGCGTG
ATCCGCGAGG ATCTCGTGCG CTTCGACGCC CTGCCGATGG TGACCCGCGC GCCCTCGGTC
GCGGGGCTCG CGCCCGGAAC CCGCGTCCGC CTGGCGATCT CCAACATCGA CCTGCTCGAC
ATCAGCTTCC ACGCCGAATA TCTCGAGACC GTGCCTGACA GCACGGCCGC CGTTCCGTAG
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| Protein sequence | MHVIFEEDGH FKAGSILSET EATAQVESAS GKRSKVKAAA ILLRFTAPAP EDVMSAAEKL
GEELDADFLW EAAGSEEFGF EQLAGEYYGH APSPAESVAL LQKLHASPIY FHKKGKGRYR
PAPPETLAAA KAGLEKKRIA AERQAYLAHE LAAFRLPPEY ASLIPRILIA PDKNTLEYKA
LEDAAAATGL SPLRLVERCG AIPSTLDFHL MSFLLEYFPR GTGFAPVTEP LDPPELPSSP
VRAFSMDDEA TTEIDDALSV AWHDDGSVRV GIHIAAPALG IAPGSELDRV ARERLSTVYF
PGDKITMLPE TLIHHYTLGE AHDCPALSLY VDVAADLRVL GTETRLEMVH IADNLRHETL
EIEFNAETLR NPAVADYPYR RELEWLHDFA AVLEAGRGKT DTVERVDYSF KLDGDRISIA
PRKRGSPIDK VVSELMIFAN AHWGGWLAEK RVPGIYRAQA NGKTRMTTAP DPHVGLGVDQ
YAWSTSPLRR YVDLVNQRQL ISLVRDEDPV YPPRSEALFS VVREFELAYD AYNDFQRRLE
RYWMLRWLIQ ENVDEIVASV IREDLVRFDA LPMVTRAPSV AGLAPGTRVR LAISNIDLLD
ISFHAEYLET VPDSTAAVP
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