| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1953 |
|---|
| Symbol | |
|---|
| ID | 3674063 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | - |
|---|
| Start bp | 2046487 |
|---|
| End bp | 2047851 |
|---|
| Gene Length | 1365 bp |
|---|
| Protein Length | 454 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637710652 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_315711 |
|---|
| Protein GI | 74317971 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3706] Response regulator containing a CheY-like receiver domain and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.363504 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.99023 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTTTC CCCCGATAGC CGAATTGGCG ACGACCGACA TCGTGAGCGT GTCGTCGGAG
GTCAGCGTGA GCGAGGCGTT GCGGCAGATG GCTGCGCGGA ACGTCCGCAA CATCGTGGTG
CGGCGCGGCG AGGGGAGGTA TGGGCTACTG ACCGCGCCGG ACGTCGTGAA ACTGCGTTTT
GGCGAGAAGG GCCTCGGCAT CGCGGTCGGA AACGTCGAGT GCGCGGAGCT CCCCGTCATC
CCGCAGGACT ACAACATCCT CGACATGTTC GACCAGCTCG ACGGCTCACA GGGATACGCG
GCGGTCGTCG ACGGGTCGGG CGACCTGTAC GGCATCGTTT CCAATTCGGA CATCCTGGGC
AGCCTCGATC CGCAGCTCAT GCTGCAGCGA CAGTGTCTGG GCGATCTGCT GAAGCGTCAC
GAGATCAAGA CCGTGCACGC GGCGACGCCT CTCGCGGACG TGCTCGTGCA ACTGGTCCAG
GCCGACGATG CGGTGATCGT GATCGATCAG GAGGCAGAGA TTGGCATCCT CACGACCCAG
GACGCGGTCC GTATCCTGCA GAGCGACGCG CCCTTGGCCG ACCCGGTCGC GGCGCACATG
TCCGCCCCGC TGCACACGGT TGGCCACGGC CTCACGGTGA GCGAGGCGAT CGCGACGCTG
CACGAGAAGC ATTTCAAGCG CCTCGTCGTC AGGGACAGCG ACAGCGGAAG AATCATCGGC
CTCATCACGC AGAAGGACTT GATCGGCGTC GCGTATAGCC GCTGGGCGGA CTTGATGCGA
CACCACGCAC TCGAGTTGCA GGAGGTCATC GACATCCTCG AGCGCAAGGC CGCGCGGCTC
GAGCGGATGG CGACGACGGA TGCCTTGACC GGCATTGCCA ATCGGGCCCG TTTCGAAGAA
TTGCTGCAAT TGGAGCAACA GCACTGCCTG CGCGTGCCGG GTCAGCCTTT CTCCGTCATC
CTGTTCGATA TCGATCGCTT CAAGCAGATC AACGATACCT GGGGACACGG TCAGGGGGAC
GACGTTCTCA AAACCATCGC ACGCGAGGTA CAGGGCCTGC TGCGCACGGC CGATACGCTC
GCGCGCTGGG GGGGCGAGGA ATTCGCCGTC CTGCTGCCGC GGACCGATCT CGATGCGGCT
CGCGTGGTCG CCGACAAGAT TTGCGGTGCG CTCGGGCAGG TACCGCTCGA GCGCGTCGGA
ACCGTGACAG CGAGCTTCGG TGTGGCCACG ATCGAGTCGG GAGAGCCGGG CGCGGCCCTG
CTCGCGCGCG CGGACGGCGC GCTTTACGAG GCCAAGCGCC GAGGCCGCAA TCAGGTGGTC
CAGGCGCGCG CGACGGATGA GCGCGTGGCC GATCCGGGCA GATGA
|
|---|
| Protein sequence | MFFPPIAELA TTDIVSVSSE VSVSEALRQM AARNVRNIVV RRGEGRYGLL TAPDVVKLRF
GEKGLGIAVG NVECAELPVI PQDYNILDMF DQLDGSQGYA AVVDGSGDLY GIVSNSDILG
SLDPQLMLQR QCLGDLLKRH EIKTVHAATP LADVLVQLVQ ADDAVIVIDQ EAEIGILTTQ
DAVRILQSDA PLADPVAAHM SAPLHTVGHG LTVSEAIATL HEKHFKRLVV RDSDSGRIIG
LITQKDLIGV AYSRWADLMR HHALELQEVI DILERKAARL ERMATTDALT GIANRARFEE
LLQLEQQHCL RVPGQPFSVI LFDIDRFKQI NDTWGHGQGD DVLKTIAREV QGLLRTADTL
ARWGGEEFAV LLPRTDLDAA RVVADKICGA LGQVPLERVG TVTASFGVAT IESGEPGAAL
LARADGALYE AKRRGRNQVV QARATDERVA DPGR
|
|---|
| |