| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1862 |
|---|
| Symbol | |
|---|
| ID | 3671527 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | - |
|---|
| Start bp | 1958268 |
|---|
| End bp | 1959530 |
|---|
| Gene Length | 1263 bp |
|---|
| Protein Length | 420 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637710561 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_315620 |
|---|
| Protein GI | 74317880 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4726] Tfp pilus assembly protein PilX |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACAT CCGGCAAGCC GTTCGTTCCC GCCAGCCAGC GCGGCATCTC CCTGATCGTC
ACCTTGATGA TCGTGATCCT GCTGAGCCTG CTCGCGCTCT ACGGCGCAGG CGTGCTGACG
CTCGATACCC GTTCCGCGGC CAACGATTTT CGTGCGCGTG AGGCCCTCGC GGCGGCCGAG
TCGGGGATGG AGCAGGGCTT GGGCCTGCTG AACGCCAATC GGGCACGCCT CAGCCCCAGC
GGATTGCATA ACAGTGACGA CCTGACTACG ACCCCGATCC TGACCTGGAC GACCTGTACC
AGTTCGGCGG CTCCATGCCT GCCGATCCGC TCGGGCGATC GGACCAATTG GAAATACCTT
GCGATCAATA CATATTCCAG CGGTAGCCTG ACCAGTCAGC CGAGTCAGGG CAGTTTCGAG
CTGTTCCTGC TGACCCCCGT CAGCGGTGCA AGCAGCCGAC TGGTATACAA CGTTGTCGCC
ATCGGCAAGT CGGCGGATAC CACCAGCACC TCGGTGATCA AGCAGGGCGC GTTTTTCTAC
CCGTTGCTGC TCGGCAACGT CGGCACGCCG CTTGCGGCGG CGAGCAACGT CGACTTGACC
GGCAACTACA GCATCATCAC CAACTCGAAC GGCGGCGGAT CGGGCGTACC CGTGTCGGCC
TGGTCGGACG GCGCGTTCAG CCCGGGCGGA AGCTTTGCAA GTTGCCACGT CGGCGATTTC
ACCGGCGGGG CCTGCCCGTC GTCCGAAGCG CTCACCTCGA GCGGCACGGT CGGTCCCGAC
ATGATCGGGA ACGATGCCAA CTTCCCCGCC GACCTGTTTC TGTTCCTGTT CGGCGTCCCC
GAAACCGAGT ATCAGAAAAT CAAGGATCAA GCGAAGGTCG TGACGAGTTG TGCCGGCCTC
GGCGCGACAT CCAGCGGCCT GATCTGGGTC ACCGGCGACT GCAATCCGCC CGGTCAGGTC
GGAACAGCCG ACAATCCGGT GCTTCTCGTG GTGGAAGGCG ACACCACGTT CAACGCCGGC
ACTGAATTCT ACGGTCTGCT GTACCTGTTC GACCCGGCGT TCGCAGCGGG CACCCCGCCG
CGCCTGATCG CCAACGGCAA CGCTCACCTG TACGGCGCAT TGTTTGCGCA CGATGGCGTC
GATTTGCAGC TTACGGGCGG ATTCGTCCTC GAATTCGACT CCGAAGTTTT GGAAAACCTG
AAAAACAGCC CATCCGGTCG CAATTTGGCG CGCATTCCCG GCGCCTGGTC GGATGTTCAG
TGA
|
|---|
| Protein sequence | MTTSGKPFVP ASQRGISLIV TLMIVILLSL LALYGAGVLT LDTRSAANDF RAREALAAAE
SGMEQGLGLL NANRARLSPS GLHNSDDLTT TPILTWTTCT SSAAPCLPIR SGDRTNWKYL
AINTYSSGSL TSQPSQGSFE LFLLTPVSGA SSRLVYNVVA IGKSADTTST SVIKQGAFFY
PLLLGNVGTP LAAASNVDLT GNYSIITNSN GGGSGVPVSA WSDGAFSPGG SFASCHVGDF
TGGACPSSEA LTSSGTVGPD MIGNDANFPA DLFLFLFGVP ETEYQKIKDQ AKVVTSCAGL
GATSSGLIWV TGDCNPPGQV GTADNPVLLV VEGDTTFNAG TEFYGLLYLF DPAFAAGTPP
RLIANGNAHL YGALFAHDGV DLQLTGGFVL EFDSEVLENL KNSPSGRNLA RIPGAWSDVQ
|
|---|
| |