| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1821 |
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| Symbol | |
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| ID | 3671485 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 1922143 |
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| End bp | 1923840 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637710519 |
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| Product | putative type IV secretory pathway VirD4 component |
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| Protein accession | YP_315579 |
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| Protein GI | 74317839 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.49149 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGGACAA AACAGCGAAT TTCAGATGGG CTTTTTCGCG CCAAACTGCT CACAGGCAGC
ATTATTCTCG GCGCATTTCT GGGCGTCACC ACCTACATTT TTTGGCTGAG CGGCTGGGCC
GGCATGGACT TGATCCAGCT CGCCCGGGGT GGTCTGTACG TGTACCAGCG CGCCCCCGGC
ATGCTCGGCC TCGCCGCGTT CGGCGGGGCG TTTGGCCTAG GCTGGATCGC CTGGATGTTT
GCCTGGCGCC CTGGCGCCGC CCGCCCCGGC GACGCGGACG ACGATGCCGA TAACCTGCGC
GGTCAGCAGC TTGTGACCGT CGCCGAAATC AAAAAACAAA TCCGGAGTGC GAAAACAAAA
ACACGTCTGG AAATCGGCGG CGTACCGATC CCCATTTATG TAGAAGATGG GGGGTTTTTA
CTGACCGGCT CTCCCGGCAC CGGTAAATCC CAGGCGACCA CAAAAATGCT CGACACCCTG
CAAGCCGGCG GTCACCGCGC GGTGATCGCT GACGCCGAGG GCATTTTTTA TTCTCGGTAT
GCCGGAGACG GCGCTGTGCT TTTTAATCCC CTCGATCGCC GTAGCGTGTC GTGGAGCCCG
CTGGCTGAAC TGAAATCGCC GCAGGACTGC TCTGCGCTGG CCAAATCGCT CATCCCCGAC
GGTCATGGGG CGGAGGCGAG CTGGAACGAT GCAGCGCAGA CTGTTTTGGA AGGGTTGCTG
CGCAGGTGCT GGGAAACCAG CAAGACGAAC GCCGAGCTTT ATCGCCTGGC TTGTGTTGCC
GACATAGAAG AGCTGCAGCA GCTGTTGGCA GGCACCGCCG CGATGACGGT CGTCGGAAAC
GCGAGGTACT TCGGCGAGGT CCGTCCCGGA CTTGGCCGAT ATCTCCGGTG TTTTGAGCAT
CTTGATCCTG CTGCAGGACG GGCCAGTTTT TCCGTCCGCG ACTTCATCAC CGAAGAAACC
GGCTGGCTCT TTATCTCGTA CACCCAAGAG CAGCGGGCCG CGTTGCTGCC CCTGATTCAA
TGCACGCTGG ACGTTGCCAG CCGGGCCATT CTCAGCTTGC CGCATACCAC GGGGGACCGG
AGCAAGCTGC GGCGGACCTG GCTTGTGTTA GATGAGTTGC CGCTGCTTGG TCGCATCATG
TCCCTTATCC CTTTGCTCAC CAACGGCTCG AAGCACGGTG CCGCAGTGAT TGCGACGGCC
CAGACAATCG CGCTGTTCAG AGAAGCTTAT GGCCATGACG CGACGCAGAC GATTTTGGCG
ACGCTAGGCA CCTGGCTGAC CCTCAGAGTC AGCGACGCCG AGACTGCTGA GTACATGTCT
AAATCGCTCG GCGACGAGGA AGTCCGTCGC GTCGTCGCCA GCGGCGGGAA AAACGATTCT
GGAAAGTCTG ATAACTGGTC TGAGCAGCAC AGCACGCGAC GCGTGGTGAT GCCGTCGCAG
CTGCAAAACC TGCCCCGCCT CCATGGCTAC CTCAACATTT CTGGGCCGCT GCCGGTCTGC
GCCGTGACGT TGCCGTACGC CGACGAGCGT GAGCCAGCCG CCCCGGCATA TGAGCCCGCG
CCGCTACGGT CGGCGGTCCC CGTGCCCGTG TCGGCTGCCG TCACTAGTGA GGCCGACCCC
AGCACTGTCG AGGGCGACGG CAACACCACC GACACCACGG CTGATAGCGC CGACGTGCCG
TTTACTCTGG AGCGATAA
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| Protein sequence | MGTKQRISDG LFRAKLLTGS IILGAFLGVT TYIFWLSGWA GMDLIQLARG GLYVYQRAPG
MLGLAAFGGA FGLGWIAWMF AWRPGAARPG DADDDADNLR GQQLVTVAEI KKQIRSAKTK
TRLEIGGVPI PIYVEDGGFL LTGSPGTGKS QATTKMLDTL QAGGHRAVIA DAEGIFYSRY
AGDGAVLFNP LDRRSVSWSP LAELKSPQDC SALAKSLIPD GHGAEASWND AAQTVLEGLL
RRCWETSKTN AELYRLACVA DIEELQQLLA GTAAMTVVGN ARYFGEVRPG LGRYLRCFEH
LDPAAGRASF SVRDFITEET GWLFISYTQE QRAALLPLIQ CTLDVASRAI LSLPHTTGDR
SKLRRTWLVL DELPLLGRIM SLIPLLTNGS KHGAAVIATA QTIALFREAY GHDATQTILA
TLGTWLTLRV SDAETAEYMS KSLGDEEVRR VVASGGKNDS GKSDNWSEQH STRRVVMPSQ
LQNLPRLHGY LNISGPLPVC AVTLPYADER EPAAPAYEPA PLRSAVPVPV SAAVTSEADP
STVEGDGNTT DTTADSADVP FTLER
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