| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1698 |
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| Symbol | |
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| ID | 3671281 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 1789258 |
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| End bp | 1790532 |
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| Gene Length | 1275 bp |
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| Protein Length | 424 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637710388 |
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| Product | putative squalene/phytoene dehydrogenase |
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| Protein accession | YP_315456 |
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| Protein GI | 74317716 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3349] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR03467] squalene-associated FAD-dependent desaturase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.837953 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGCCGG ACGTCGCGGT GGTCGGCGGC GGCTGGGCAG GCTGCGCCGC GGCGCTCACG
CTGGCCGAAG CGGGCGTGCC GGTCACGCTC TACGAAGCCG GGCGCGTCCT CGGCGGGCGC
GCGCGCGCCG TCGAACTTGG CGACCGCGTT CTCGACAACG GCCAGCACAT CCTCCTCGGC
GCATACACGA ACACGCTCGA ACTGATCGCG CGCGTGCATC CCGCGCCGCG CACCCCGCCG
CTCTGGCGGC TGCCGCTCGC CTTCGACCAG CCGCCGGATT TCCGCCTGCG CTGCCCACGG
CTCCCGGCGC CGCTCCACCT CGCGGCGGGC CTGCTCGGCG CGCGCGGGCT CGACTGGCAC
GAAAAGTTGA CTGCAGCGCG CTGGGCGGCG GCGCTGATAC GCGGCGCGGC CACGCCTCCC
GGGACCGTCA GCGAACTCAC GCGCGGCCAG CCCGAAAAAC TGCGCGCCCT GCTGTGGCAT
CCGCTCTGCA TCTCGGCGCT GAACACCCCG CCGGAGACGG CGTCGGCGGC CGTCTTCGCC
TCGGTCATCC GCGCTGCATT CGGCGGCCGG AACGCACACA GCGACCTGCT GCTGCCGCGC
AGCGACCTCG GCGAACTGTT CCCCGTTCCG GCCGCGCGGC GGATCGTCGA CGCGGGCGGC
GTGGTGCGCC TCGCCTGCCG TGTCTCCGGC CTCTCCGCCC GCGCCGACGG CATCACGACC
CTGCTCGGCG CAGGGAACCA AACGCACGCG CACAGCCACG CGATCATCGC CGTTGCGCCG
CAGCACGTGA AAGGCCTGGC GGCATCGATT TCCGAGCTCG GCGACGCGGT CGCGATGCTC
GCGCACTACG ACTACCAGCC CATCGCGACC GGCTACGTCC AGTACGCGCC GGACTTCCGT
TTGCCGAAGC CGTTTCTGGC CCTCGCCGAA GGACCGGCGC AGTTCGCGTT CGATCGCGGG
CAGAGCCATG CTCAGCCGGG CCTCATCGCC TTCGTCGCCA GTGCGGCGGC CGACCTGCCG
ACGGACTGGC TCGACCGCGC GGAAGCCCAG TTGAGGCGCA GCGTGCGCCC GGGTCGGCCA
CAATGGCGCA AACGCATCGT CGAAAAACAG GCCACTTACG CCTGCCGGCC CGGCATGGCG
CGCCCCGCCG TTCGTACGCG GCATCCACGC GTTTTCCTCG CTGGCGACTA CACCGCCGGC
CCCTATCCCG CGACGCTCGA AAGCGCAACC CAGAGCGGGG TACAATCGGC CGCCTCTCTT
CTCGAAACGC TATGA
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| Protein sequence | MTPDVAVVGG GWAGCAAALT LAEAGVPVTL YEAGRVLGGR ARAVELGDRV LDNGQHILLG
AYTNTLELIA RVHPAPRTPP LWRLPLAFDQ PPDFRLRCPR LPAPLHLAAG LLGARGLDWH
EKLTAARWAA ALIRGAATPP GTVSELTRGQ PEKLRALLWH PLCISALNTP PETASAAVFA
SVIRAAFGGR NAHSDLLLPR SDLGELFPVP AARRIVDAGG VVRLACRVSG LSARADGITT
LLGAGNQTHA HSHAIIAVAP QHVKGLAASI SELGDAVAML AHYDYQPIAT GYVQYAPDFR
LPKPFLALAE GPAQFAFDRG QSHAQPGLIA FVASAAADLP TDWLDRAEAQ LRRSVRPGRP
QWRKRIVEKQ ATYACRPGMA RPAVRTRHPR VFLAGDYTAG PYPATLESAT QSGVQSAASL
LETL
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