| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1696 |
|---|
| Symbol | |
|---|
| ID | 3671279 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | + |
|---|
| Start bp | 1787568 |
|---|
| End bp | 1788413 |
|---|
| Gene Length | 846 bp |
|---|
| Protein Length | 281 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637710386 |
|---|
| Product | putative phytoene synthase-like protein |
|---|
| Protein accession | YP_315454 |
|---|
| Protein GI | 74317714 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1562] Phytoene/squalene synthetase |
|---|
| TIGRFAM ID | [TIGR03464] squalene synthase HpnC |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 0.635329 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCTAAGT CATTATTCCC ATTCCGTTTT TTATTGCCGG TGCCGGTCGA CCACTACGAA
AACTTCCCCG TCGCGTCCTG GCTGCTGCCC GGGCGGCTAC GGGAACCGGT AAGCGCCATC
TATCGCTTCG CCCGCAGCGC GGACGACCTC GCCGACGAGG GCGACGCACC GCCCAGGGCT
CGCCTGCAGG AATTGGCGCG CTACCACAGC GAACTCGACC GTATCGAACG CGGTGAAATT
CCCGACGACC CGATCTTCGG GCGCCTCGCC GCCGCTATTC GGGCGCACGC GCTGCCGCTC
ACGCCGTTTC GCGACCTTCT GTCCGCCTTC GCGCAGGACA TCGAGAAAAC CCGCTACGCC
AGCTTCGGCG AGGTCATGGA TTATTGCAGG CGCTCGGCCA ATCCGGTCGG ACGCCTGATG
CTGCATCTGT ACGGCGACCA CGACCCGCGC CACCAGGCCT ATTCAGACGC CATCTGCAGC
AGCCTGCAAC TGATCAACTT CCTGCAGGAC GTCGCGATCG ACTATGCCAA GGGCCGCATT
TATCTGCCGC AGGACGAACT CGCCGCACAT CACGTCAGCG AGGCGCAAAT TGCCGCGGGC
GATGCCGGCG GGCTCTGGCG CATGATGATG CATAAACAGA TCGAACGCGC CCGCAAGCTG
CTGCAGGCCG GCGCACCGCT CGGGCGCGCG CTCGACGGAC GCATCGGGCT CGAACTCCGG
GTAACGATTC GCGGCGGCGA AACGATCCTG CGCAAGCTTC ACGCCGATCC GGGCTGCGTG
TTCGGTGCAC GTCCCGTCCT CGGCAAGAGG GACTGGATCG TCATGCTCGC GCGCAGCGTT
CTCTGA
|
|---|
| Protein sequence | MSKSLFPFRF LLPVPVDHYE NFPVASWLLP GRLREPVSAI YRFARSADDL ADEGDAPPRA
RLQELARYHS ELDRIERGEI PDDPIFGRLA AAIRAHALPL TPFRDLLSAF AQDIEKTRYA
SFGEVMDYCR RSANPVGRLM LHLYGDHDPR HQAYSDAICS SLQLINFLQD VAIDYAKGRI
YLPQDELAAH HVSEAQIAAG DAGGLWRMMM HKQIERARKL LQAGAPLGRA LDGRIGLELR
VTIRGGETIL RKLHADPGCV FGARPVLGKR DWIVMLARSV L
|
|---|
| |