| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1686 |
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| Symbol | |
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| ID | 3671268 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 1773424 |
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| End bp | 1776147 |
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| Gene Length | 2724 bp |
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| Protein Length | 907 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 637710375 |
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| Product | putative ATP-dependent exoDNAse (exonuclease V) alpha subunit |
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| Protein accession | YP_315444 |
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| Protein GI | 74317704 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
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| TIGRFAM ID | [TIGR02686] conjugative relaxase domain, TrwC/TraI family
[TIGR02768] Ti-type conjugative transfer relaxase TraA |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.169345 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.175397 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCTATCAG TTTCAGTCAT TGGTGCCGGC AGCGAAGCTG CTGGCTATGC CGCCTATCAA
GAAAATGAAG TCGCTGCGGC GCAGCGTGAG GACTACTACG CAGGGGAAGG CGACGTTGGC
CGCTGGGTAG GTAAAGCGGC GCAGGAAATG AGTCTGGCGG GCGAACTTAA GCCAGGCCAA
CTGCTGGCCG GCCTACAGGG ATTCCACCCC GAAACCGGCG AGGCGCTGTC GAAAAACGCG
GGCGAGAAAC ATAAAGGCGG CTGGGACCTG ACGTTCTCGG CTCCGAAATC GGTCTCTTGT
GTCTGGGCCG TGGCCGATCC TGAAACACGC GGCGCAATTG AAGACGCACA GAATGCCGCC
GCAGCACGAG CCCTGCAATT CCTGGAAGAA TCCGGCGCGT TCACCTCACG CAGCCGGAAC
GAGCCAGGCC CCGTGGAAGG GGTGGCCGCC GCTATGTATC AGCATGGCAC GAGCCGCGAA
GCGGATCCTC AGCTTCACAC CCACGTTGCC GTCCTCAACG TGCAACCAGA CGGCACCGCG
ATGGATTTCG ACACCCGCTG GAAGATGGCC GCGGGCGCGG TTTACCGGGC CGAGCTGGCT
GCCGAAATGC AGAAGCTGGG CTTGCGCGTC GAAGCAGACG GCAAGAGCTT CCGCGTCGTT
GACGTGCCGG CAGCGGTCGA GAAAGAGTTC TCGACCCGCC GCGGGCAGAT CGAGGAAGCC
CTTGCCGCCA AGGGCTTGAA GTCAGCCAAG GCCGCCGAAG TAGCCGCCCT GTCCACCAGG
AAGGGAAAGG AGCCGACTAC GCGAGATGAG CTCTTTGCCG ACTGGAAAAC CCGCGCCGCC
GAGCACGGAT TTAGCCTGGA ATCGATCCAG GCCTTGCGCA ATGCGCCGCG TCAGCAGGCC
GAGGAACTCG ACCTCGACGA GATCCTCGGC AAACTGACAG AACAGGCCTC CACCTTCACC
CCTCAGCAGT TGGCCGCAGC CGTGGCTGTC GAGATGCAGG GCAGGGGCGG CGCGGATGCA
ATCCAGAAAG CGTTACGCGA CCTGACAAAA CATCCCGACC TCGTCCGTCT CGAATCCGAC
AAGCCGCGCC ACCTCATGCG CGGCGAGCCG ACCGAGACCC GTTACACCAC GCGCGAAATG
CTCGGAATCG AGCAAGGCAT TCTCGACAAG TCCATGGCCC GCCAGACCGA CATGAGTCAT
CGAGCCGATA TCGCCGCTGC CATCGCAGCG CGTCCGACAA TGACGGACGA ACAGAAAGCT
GCGCTCAAGC ATGTCTGCGA AGATCCGGGC GCGGTCAAAA TCATCGAGGG TATGGCCGGC
ACCGGCAAGT CATATCTCAT GGATGCGGCG CGCGAATCGT GGGAAGCGGC AGGCTTCGAG
GTGGAGGGAG CAGCCTTAGC AGGTAAGGCC GCCTCTGGCT TGGAAAGTGG CGCTGACATC
AATTCGAAAA CGATCCACTC GCTGCTCTTC CAGCTCGACA GCGGCCAGCG CCAACTTCAT
AGCAAATCAA TCCTCGTGAT CGACGAGGGC GGGATGGTGG GAAGCCGTCA GCTCGCGCGT
GTGCTGGACC ACGTCCACAA GGCCGGCGCC AAGGCTGTGA TGGTGGGTGA CTCATGGCAG
CTCCAACCGA TCGACGCCGG CGGCGCGTTC CGCCTTCTCT CCGAACGATT GGGCTCGGCC
CGGTTAGAAA ACATCGTTCG TCAAAAACAT GAGGTAGATC GTCGGGTCGT GCGCCTTTTT
GCGGATGGCA AAGCCGCCGA GGCCCTTGAG TCAATGCGCG AACGCGGGCT TCTCAAGACC
GCTGAAACCC GGGCGCAGGC CATGCAGGAG ATGGTGCGCG ATTGGGCGCA GGCACGCGAT
CCATCCAAGC CTGGTGAGTC GATCATGTTG GCCGCCACTC GCTCCGAGGT TGCACATCTC
AACAACTCAG CTCGCCAGAT TTTGAAAGCC GAAGGGCGCT TGGCTGGTGG ATTGCAGGTG
CCAACCGCCG GTGGAATGAA GGAGTTTGCC GTTGGTGACC GGATCATTTT TGGGAAAAAT
AATTCTGTCT TTGGAGTAAA AAACGGCGAG CTCGGCACGG TTGAATCCGT GCGTTTCAAC
AAGACGGGGC AGGTGGAAAT AACCGCGCGC CATGACAACG GCAAGGCGGT CAAATTCACA
GTCGGTGAGG AAAAGGGCCA ATTTGAGGTT TTCGATTATG GCTACGCCAT GACCGTCCAC
AAGGCGCAGG GCGTGACCGT TGATCGCGCC TTTGTTCTTC CTTCCGATTC GATGTCGTCG
AGGGAATGGA CCTACGTCGC CATGTCACGC CATCGCCTTG AGGCGCGGAT GTACATCACG
CGCGATTCAG TTGAGGCCCT CACCAAGACA ATGAGCCGGG CGCAAGGCAA AGAAACCAGC
CTGGACTTCA AGCTTGCCGC CACCTCGGAA AAAACCGACG CGCCAGAATC GACTACAAGC
CTCGATCGCG AGGCGACCGA AGCCAGCACC TCGACCCAAA AAGAAAACGC GCCGCAAGCC
CTCGACGCCG TCTCGGTCTC GCGCCACGTC GCGGACAAGG CTGTCGATTC CGCCGGCCTC
AGCGACAAAC AGAAACACCA GGTCAACAAA GTGCTGGACG TCGCCGAGCT CGCCGCGCAC
ATCAAAACCG GCAACCTGGC GGGCGCCGTC AGGAAGGCCG AAGACGTTCA AAAACACATT
CACGACGAGG GCCTCGCACC ATGA
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| Protein sequence | MLSVSVIGAG SEAAGYAAYQ ENEVAAAQRE DYYAGEGDVG RWVGKAAQEM SLAGELKPGQ
LLAGLQGFHP ETGEALSKNA GEKHKGGWDL TFSAPKSVSC VWAVADPETR GAIEDAQNAA
AARALQFLEE SGAFTSRSRN EPGPVEGVAA AMYQHGTSRE ADPQLHTHVA VLNVQPDGTA
MDFDTRWKMA AGAVYRAELA AEMQKLGLRV EADGKSFRVV DVPAAVEKEF STRRGQIEEA
LAAKGLKSAK AAEVAALSTR KGKEPTTRDE LFADWKTRAA EHGFSLESIQ ALRNAPRQQA
EELDLDEILG KLTEQASTFT PQQLAAAVAV EMQGRGGADA IQKALRDLTK HPDLVRLESD
KPRHLMRGEP TETRYTTREM LGIEQGILDK SMARQTDMSH RADIAAAIAA RPTMTDEQKA
ALKHVCEDPG AVKIIEGMAG TGKSYLMDAA RESWEAAGFE VEGAALAGKA ASGLESGADI
NSKTIHSLLF QLDSGQRQLH SKSILVIDEG GMVGSRQLAR VLDHVHKAGA KAVMVGDSWQ
LQPIDAGGAF RLLSERLGSA RLENIVRQKH EVDRRVVRLF ADGKAAEALE SMRERGLLKT
AETRAQAMQE MVRDWAQARD PSKPGESIML AATRSEVAHL NNSARQILKA EGRLAGGLQV
PTAGGMKEFA VGDRIIFGKN NSVFGVKNGE LGTVESVRFN KTGQVEITAR HDNGKAVKFT
VGEEKGQFEV FDYGYAMTVH KAQGVTVDRA FVLPSDSMSS REWTYVAMSR HRLEARMYIT
RDSVEALTKT MSRAQGKETS LDFKLAATSE KTDAPESTTS LDREATEAST STQKENAPQA
LDAVSVSRHV ADKAVDSAGL SDKQKHQVNK VLDVAELAAH IKTGNLAGAV RKAEDVQKHI
HDEGLAP
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