| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1439 |
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| Symbol | |
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| ID | 3672280 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 1526329 |
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| End bp | 1528299 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637710124 |
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| Product | type II secretion system protein D |
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| Protein accession | YP_315197 |
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| Protein GI | 74317457 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.0989759 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCCTTCC ATCCGTCGCC CTTGCTCACC GCGCTGGTCG CGTTCAGCCT GACCGCGTGC
GCAGGCACCG GTCTCAAGGA GGGCCGCAAG CTGATCGACG CCGGGCAGCC CGAGGCCGGG
ATCGCGCGCC TGCGCACCGC CCTGGCCGAA GAACCCGACA ACATCAAGCT CAAGGCCTAC
TACCATACGC AGCGCGAGCG CATCGCCAGC GAACTATTGG TGCGGGCGCA ACAGGATGTC
CACGCCGCAC GCTTCGACGC GGCCGAAACC AAGCTCGACA GCGTGCTCGA AATGCATCCG
GAAAATCCGC GCGCGCTCGC CCTGCGCGCC AATCTCGAGA CGGCGCGCCG CCACGAAGCG
GCCTTGCAGC AGGCGAACAA GGCGCTCGCC GCGGGTAAGG TCGACGCGGC CGCGCAGGCT
GCGCGCGAGA TCCTCGCGCA GGCGCCGGGG CATGCCGGCG CGCTTGCCCT GCTGCGGCAG
ACCCAGGCCG CGCACGCGCC CGACGAACTC GCGATGCGCC GGCTCGGCCC GGCCTTTCAC
AAACCGATCA CGCTGGAATT TCGCGACGCG CCGCTGCGCA ACGTCTTCGA CATGATCGCC
CGCCAGTCCG GCCTCAACTT CGTTTTCGAC AAGGATGTCC GTCTCGACAC CAAGGCCACG
CTGTTCGCGC GCAACACGCC GATCGACGAG GCCGTCGACA TGCTCCTGAT GACCGGGCAG
CTGTCGAAAA AGGTGGTCAA CGCCAACACG CTGTTGATTT ATCCCGACCA GCCGCAGAAG
CAGAAGGCCT ACCAGGAGCT GATGGTGAAA AGCTTCTACC TCGGCAACGC CGACGCCAAG
GCGACGATGG CAATGCTGCG CACGCTGGTC AAGGCGAAGG ACCTGCACGT CGACGAACGG
CTCAACCTGC TGGTCATGCG CGACACGCCC GATGCGATCC GTCTCGCCGA GCGCATCGTC
GCCGTGCAGG ACCTGGCCGA GCCCGAGGTC ATGCTCGAGG TCGAGGTGCT CGAAGTGAAG
CGCGGGCGCC TGCTCGACCT CGGCATCCAG TACCCGACCA ATTTCAGCCT GCTCAACCTG
CCGCCGGCGA CGAGTTCGAC CATCGGCCCC GGCGGGGTCG TCACCAATAC GACCCCGCCG
CCATCGGTGC TGACCGTCGA GAGCCTGAAG AACATCACGG CGAGCCAGAT CGCGATCAGC
CCGACGCCCG GCGTCGACCT CAGAAAGCAG GACAGCGACG TCAACATCCT CGCCAATCCG
CGCATCCGCG TGAAGAACCG CGAAAAGGCC AAGATCCACA TCGGCGACAA GGTGCCGGTG
ATCACGTCCA ACACGACGTC GACCGGCGTC GTCTCCGAAT CGGTGTCGTA TCTCGACGTC
GGCCTCAAGC TCGACGTCGA ACCGAGCGTG CTGATGCGCG AGGACGTGCA GATCCGCGTC
GGCCTCGAGG TTTCCAACAT CGTGCGCGAG ATCCGCAGCG GCAACGGCAC GCTGACCTAC
CAGATCGGGA CGCGCAACGC CGGCACGACG CTGCGCCTGA AGGACGGCGA GACCCAGGTG
CTCGCCGGCC TGATCTCGGA CGAGGACCGC AGCACGGCGA GCCGCATTCC CGGGCTCGGC
GATCTGCCGC TGATCGGCCG CCTGTTTTCG AGCCAGCGCG ACGAGCGCAA CAAGACCGAA
ATCGTGCTTC TGATCACGCC GCGGGTGCTG CGCAGCGACG CGACGCGGCT GCCCGCACTG
ACCGAATTCC GGGGCGGCAC CGAGAACGCG ATCGGCGGCG GCGGCGCCGT GCCGTTCAGC
GCGCCGGCCC TGCCCGAAGC GTCGCAGCCG CCGCTGCCCG ACGAAGGCCC GACCTCGCCG
TCGGCGATTG CACCCGCGCC CGAGTCGGAG ATCCCGCCGG CGCCCGACAC GTTCGGGACG
CCGAGCGTGC CTGTCCCACA GATTCCCGCA CCGCCGGACG CGGCCGATTG A
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| Protein sequence | MSFHPSPLLT ALVAFSLTAC AGTGLKEGRK LIDAGQPEAG IARLRTALAE EPDNIKLKAY
YHTQRERIAS ELLVRAQQDV HAARFDAAET KLDSVLEMHP ENPRALALRA NLETARRHEA
ALQQANKALA AGKVDAAAQA AREILAQAPG HAGALALLRQ TQAAHAPDEL AMRRLGPAFH
KPITLEFRDA PLRNVFDMIA RQSGLNFVFD KDVRLDTKAT LFARNTPIDE AVDMLLMTGQ
LSKKVVNANT LLIYPDQPQK QKAYQELMVK SFYLGNADAK ATMAMLRTLV KAKDLHVDER
LNLLVMRDTP DAIRLAERIV AVQDLAEPEV MLEVEVLEVK RGRLLDLGIQ YPTNFSLLNL
PPATSSTIGP GGVVTNTTPP PSVLTVESLK NITASQIAIS PTPGVDLRKQ DSDVNILANP
RIRVKNREKA KIHIGDKVPV ITSNTTSTGV VSESVSYLDV GLKLDVEPSV LMREDVQIRV
GLEVSNIVRE IRSGNGTLTY QIGTRNAGTT LRLKDGETQV LAGLISDEDR STASRIPGLG
DLPLIGRLFS SQRDERNKTE IVLLITPRVL RSDATRLPAL TEFRGGTENA IGGGGAVPFS
APALPEASQP PLPDEGPTSP SAIAPAPESE IPPAPDTFGT PSVPVPQIPA PPDAAD
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