| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1414 |
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| Symbol | |
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| ID | 3673388 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 1500956 |
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| End bp | 1502248 |
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| Gene Length | 1293 bp |
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| Protein Length | 430 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637710099 |
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| Product | secretion protein HlyD |
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| Protein accession | YP_315172 |
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| Protein GI | 74317432 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCACC CCAACACCGC GCCGGGCGAG CGCAGCACCG CCGTGAAGGC GCTCGTCGAC
GCGCGCTCGA CTCCCTGGAC GCGCCGGCTC ATCGGCGCGG CGCTGATCTT GCTCGTGATC
GCCGTGGGCG CGTGGCTGCT TCTCGGGCTC GACGACGATG AAGACGCCGC GCGCTACAAG
ACCGCGCCGG TAACCCGTGG CGAGCTCGTC GTCAGGGTGT CCGCGACGGG CAATCTGCAG
CCGACCAACC AGGTCGAGGT CGGCAGCGAG CTGTCGGGCA TCGTCGAACG CGTGCTCGTC
GACGAGAACG ACCGGGTGAA GCGAGGCCAG GTGCTGGCGC GGCTCGACGT TTCCAAGCTG
CGCGACACGG TGACGCGGTC GCGGGCCAAC CTCGCCGCGG CGGAGGCACA GGTGCTGCAG
GCCCGGGCGA CCGTCGCCGA AGCACGCGCG ACTCGCGCGC GCTACCAGCA GGTCGCCGAG
CTCTCGGGCG GCAAGGTGCC ATCGAAGAGC GAGATGGACA CGGCCGAGGC CAACCTCAAG
CGCGCCGAAG CGAACGAGGC GAGCGCGCGG GCGGCGGTCG TGCAGGCGCG CGCGACGCTG
CAGTCGGACG AGACCAACCT CGCCAAGGCG AGCATCCGCT CGCCGATCGA CGGCGTCGTG
CTCGCACGCA AGGTCGAGCC GGGCCAGACC GTCGCGGCGT CTTTCCAGGC GCCGGTGCTG
TTCACGCTCG CCGAGGATCT CGCGCGGATG GAACTGCAGG TCGACGTCGA CGAGGCCGAC
GTCGGTCAGG TCGAGATCGG CCAGAAAGCG ACCTTCACCG TCGACGCCTG GCCGGGACGG
CTATACGACG CGGTCATCAC CCGCGTCGGC TACGGCTCGC AGGTGAAGGA GGGCGTCGTC
TCCTACCTGA CCGTGCTCGA GGTCGACAAC GACGATCTGA GCCTGCGCCC CGGCATGACC
GGGACGGCCG AGATCACGAC GCTGCGGCGG GCCGACGTCT TGCTCGTGCC GAACGCCGCG
CTGCGTTTCA CGCCGCCGCA GGCGGGCCCC GCCGAGGAAG GCCAGAGCCG GGGCGTGACA
GGCCTGCTGA TGCCGCGCCT GCCACGGCAG ACGCCGAAGC AGAAGGAGAC GCCCGCGGGC
AGTACGCAGC GCGTATGGGT CCTGCGCGAC GGCCGGCCGG CTGAAATCGC CGTCAAGGTC
GGCGCGACCG ACGGCCGCGT GACCGAAGTC ACGGGCGGCG ACCTCAAGCC CGGCATGGAA
GTCATTACCG AGGCCGAAAG CGCGGCGCGA TGA
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| Protein sequence | MTHPNTAPGE RSTAVKALVD ARSTPWTRRL IGAALILLVI AVGAWLLLGL DDDEDAARYK
TAPVTRGELV VRVSATGNLQ PTNQVEVGSE LSGIVERVLV DENDRVKRGQ VLARLDVSKL
RDTVTRSRAN LAAAEAQVLQ ARATVAEARA TRARYQQVAE LSGGKVPSKS EMDTAEANLK
RAEANEASAR AAVVQARATL QSDETNLAKA SIRSPIDGVV LARKVEPGQT VAASFQAPVL
FTLAEDLARM ELQVDVDEAD VGQVEIGQKA TFTVDAWPGR LYDAVITRVG YGSQVKEGVV
SYLTVLEVDN DDLSLRPGMT GTAEITTLRR ADVLLVPNAA LRFTPPQAGP AEEGQSRGVT
GLLMPRLPRQ TPKQKETPAG STQRVWVLRD GRPAEIAVKV GATDGRVTEV TGGDLKPGME
VITEAESAAR
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