| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0546 |
|---|
| Symbol | |
|---|
| ID | 3673797 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | - |
|---|
| Start bp | 570771 |
|---|
| End bp | 571976 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637709217 |
|---|
| Product | type IV pilus assembly protein PilC |
|---|
| Protein accession | YP_314304 |
|---|
| Protein GI | 74316564 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1459] Type II secretory pathway, component PulF |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGTTTT TCGACTACCG CGCCGTCGAC CAGACCGGAC GCAACGTGCG CGGGACGCTG
TCGGCGGTCA ACGACGTCGA CCTCGAACTG CGGCTCAAGC GCATGGGGCT CGACCTCATC
ACGCTGTCCG AGCTGTCGCG GCAGTACGCG CCGCAGGGCC GCGACCGCGT CACGCGGCGA
GACCTCGTGA CCTTCTGCAT CCACATGCGC TACATCACGC GCGCCGGCAT CCCGCTGCTT
GAAGGCCTGC GCGACCTGCG CGACAGCATG GACAAGCGCG GCTTCCGCGA CGTGCTGACC
GCGTTGCTCG AGGACCTCGA AGGCGGCAAG GTGCTGTCGC AGGCGCTGGC GGCGCACCCC
GCCGTGTTCG GCGCCGTGTT CGTCCACAGC GTCAAGGCTG GCGAGCAGAC CGGCCTCCTC
GACGCGGTCT TCGAGCGCCT CGCGGAATCG CTCAAATGGC AGGAGGAAGT CGCTGCCAAG
GCGCGGCGGC TGATGATTTA TCCGCTGCTG GTGCTCGCCG TCGTCGGCGC GGCGATCCTG
TTCCTGCTGA TTTACCTCGT GCCCCAGGTG CTCACGCTCG TCGAGACCAT GGGCGTCGTC
CTCCCGCTGC CGACGCTGAT CCTGATGGCC GTGTCCGAGG CGGTGCGCTC GTACTGGCTG
ATCGGTCTGC TCCTGGCCTT CGCGCTCGGC GTCGGCGTAC CGCTCTGGGT GACGAAGAAC
GAGGCCGGGC GCGCGTGGTG GGACCGCGCC CAGCTGCGAC TGCCGGTGGT CGGGCCGATC
GTGAAGAAAA TCGTCCTTTC GCGTTTCACC AACACCCTGG CGATGATGTA CCGCTCCGGG
GTGAGCGTGC TCGACGCGCT GCGCGCGGGC GAAATGGTCG CGGGAAACCG CCTGATCGCC
GAGGGCATCC GCCGTGCCGG CCAGCAGATC GCCGAAGGGC GCGGCCTGTC GGAAAGCTTT
CATTCGCTCG CGCTGTTCCC GCCGCTGGTG ATCCGCATGC TGCGCGTCGG CGAGACGACC
GGCGCGCTCG ACGAAGCCCT CGACAACGTA ACCTATTTCT ATAACCGCGA GGTGCTCGAC
TCGATCGAAA ACGGCCTAAG GGTCCTCGAG CCGATGCTCA CGGCCATTCT CGGGCTGCTG
CTCGGCGGCA TTCTGGTGTC GGTGCTGCTG CCGATTTACG ACCTCATCGG AAACCTGCCG
CTGTGA
|
|---|
| Protein sequence | MPFFDYRAVD QTGRNVRGTL SAVNDVDLEL RLKRMGLDLI TLSELSRQYA PQGRDRVTRR
DLVTFCIHMR YITRAGIPLL EGLRDLRDSM DKRGFRDVLT ALLEDLEGGK VLSQALAAHP
AVFGAVFVHS VKAGEQTGLL DAVFERLAES LKWQEEVAAK ARRLMIYPLL VLAVVGAAIL
FLLIYLVPQV LTLVETMGVV LPLPTLILMA VSEAVRSYWL IGLLLAFALG VGVPLWVTKN
EAGRAWWDRA QLRLPVVGPI VKKIVLSRFT NTLAMMYRSG VSVLDALRAG EMVAGNRLIA
EGIRRAGQQI AEGRGLSESF HSLALFPPLV IRMLRVGETT GALDEALDNV TYFYNREVLD
SIENGLRVLE PMLTAILGLL LGGILVSVLL PIYDLIGNLP L
|
|---|
| |