| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0435 |
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| Symbol | |
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| ID | 3671702 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 453878 |
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| End bp | 454615 |
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| Gene Length | 738 bp |
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| Protein Length | 245 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637709101 |
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| Product | ribosomal large subunit pseudouridine synthase F |
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| Protein accession | YP_314193 |
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| Protein GI | 74316453 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.23799 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGAGC CGGTCCGTCT GTCCAAGCTC ATGTCGGAGC GCGGCCTGTG CTCGCGGCGC
GAGGCCGACG CCTTCATCGA ACGCGGGCTC GTGTTCGTCG ACGGCAAGCG GGTCAGCGAA
CTCGGGACCA AGGTCGATCC GGCCTGCGCA ATCCGGCTCG ACAACGCAGC CAGCCGTCAG
CAGCAGCAAC GCGTGACGAT CCTGCTGCAC AAACCGGTCG GCTACGTCTC AGGGCAGCCC
GAGCCGGGCT ACCAGCCGGC AGTCGCGCTG ATCCGCGGCG AGACGCAGTG GCGAGACGAA
CGGCGCCCGG GGCCGGCCTT CCTGCCCGCG CACCTGAAGG GCCTCGCGCC GGCCGGCCGC
CTTGACATCG ATTCGACCGG CCTGCTCGTC CTGACCCAGG ACGGCCGCGT CGCGCGGCAA
CTGATCGGCG ACCACTCCGA CGTCGAAAAG GAATACCTCG TACGGGTCGA GGGGCGGCTC
GACGCGCGCG GTCTCGCACT CCTCAACCAC GGCCTCAGCC TCGACGGCGT TCGGCTGCGG
CCGGCGAAGG TCGCCTGGCA AAACGCCGAC CAGCTTCGCT TCAGCCTCAA GGAAGGCCGC
AAGCGCCAGA TCCGTCGCAT GTGCGAACTC GTTGGGCTCA GGGTCGTCGG CCTGAAGCGC
GTTCGCATCG GTGCAGTGCG TCTCGGCGAC CTGCCGCTCG GCCGCTGGCG TTATCTGGCG
CCGGGCGAGC ATTTCTAG
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| Protein sequence | MAEPVRLSKL MSERGLCSRR EADAFIERGL VFVDGKRVSE LGTKVDPACA IRLDNAASRQ
QQQRVTILLH KPVGYVSGQP EPGYQPAVAL IRGETQWRDE RRPGPAFLPA HLKGLAPAGR
LDIDSTGLLV LTQDGRVARQ LIGDHSDVEK EYLVRVEGRL DARGLALLNH GLSLDGVRLR
PAKVAWQNAD QLRFSLKEGR KRQIRRMCEL VGLRVVGLKR VRIGAVRLGD LPLGRWRYLA
PGEHF
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