| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A3685 |
|---|
| Symbol | |
|---|
| ID | 3624629 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 4745624 |
|---|
| End bp | 4746892 |
|---|
| Gene Length | 1269 bp |
|---|
| Protein Length | 422 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 637702517 |
|---|
| Product | elongation factor 1-alpha |
|---|
| Protein accession | YP_307128 |
|---|
| Protein GI | 73671113 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG5256] Translation elongation factor EF-1alpha (GTPase) |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00483] translation elongation factor EF-1 alpha
[TIGR00485] translation elongation factor TU |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.222951 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGCTG ATAAACCGCA CATGAACTTA GCAGTGATTG GTCACATTGA CCACGGAAAA
TCAACATTTG TAGGACGCTT AATGTACGAT GCAGGAGCTG TACCTGCACA CGTTATCGAG
AAGTATAAGG AAGAAGCAAA GCAGAAGGGC AAGGAATCCT TCGCCTTCGC ATGGGTTATG
GACTCTCTTA AGGAAGAGCG TGAAAGAGGT ATCACAATTG ACATCGCTCA CAAGAGATTC
GACACAGACA AGTACTATTT CACAGTAGTA GACTGTCCAG GCCACCGTGA CTTCGTAAAG
AACATGATCA CAGGTGCTTC CCAGGCTGAC GCTGCTGTCC TTGTTGTTGC AGCTCCTGAT
GGTGTAATGG CCCAGACCAA GGAACACATT TTCCTTTCCA GAACCCTTGG CATCAACCAG
CTTATTGTTG CAATCAACAA GATGGATGCA GTTGAATACA GCGAGAAGAG ATACAAGGAA
GTTGTCGAGC AGGTCTCTGG TATCCTTAAG ATGATCGGGT TCAAGCCAGG CGACATTCCA
TTTGTCCCAA CCTCTGCATT CTACGGTGAC AATGTTGTGA ACCACAGTGA GAAGACCCCA
TGGTACAAGG GAGTGACTAT GATGGAAGCT CTTAACAACC TCAAAGTACC AGAAAAACCA
TCCACCCTTC CTCTCAGGAT CCCTGTGGAA GATGCATACA CAATTTCCGG TATTGGAACC
GTGCCTGTAG GCAGAGTCGA AACCGGTACC ATGAAGAAGG GCGACAAGGT AGTCTTCATG
CCAGGCGGAG CAGCCGGTGA AGTAAAATCC ATTGAGATGC ACCATGAAGA AATTCCACAG
GCTCTTCCAG GAGACAACAT TGGCTGGAAC GTTCGTGGTA TCGGCAAGGC TGATGTCCGC
AGAGGAGACG TTTGTGGCCA TACTGACAAC CCACCAAAAG TAGCTGATAC GTTTGTAGGA
CAGATTGTCG TTCTGCAGCA CCCCTCAGCA ATCACTGCCG GATACACTCC TGTCTTCCAC
GCCCACACTT CCCAGATCGC ATGCCAGCTG ATCGAGCTTA ACAAGAAGCT GGACCCGAAG
AGCGGGCAGG TAAAGGAAGA AAACCCGACC TTCCTTAAGG CCGGAGATGC AGCAATCGTT
ACCATCAAAC CAACAAAGCC GATGGTTATC GAGCCAGTAA AAGAAATTCC ACAGCTCGGC
AGGTTTGCTA TCCGTGATAT GGGTATGACC ATTGCCGCCG GCATGTGTAT GAGTGTTAAA
CAGAAGTAA
|
|---|
| Protein sequence | MAADKPHMNL AVIGHIDHGK STFVGRLMYD AGAVPAHVIE KYKEEAKQKG KESFAFAWVM
DSLKEERERG ITIDIAHKRF DTDKYYFTVV DCPGHRDFVK NMITGASQAD AAVLVVAAPD
GVMAQTKEHI FLSRTLGINQ LIVAINKMDA VEYSEKRYKE VVEQVSGILK MIGFKPGDIP
FVPTSAFYGD NVVNHSEKTP WYKGVTMMEA LNNLKVPEKP STLPLRIPVE DAYTISGIGT
VPVGRVETGT MKKGDKVVFM PGGAAGEVKS IEMHHEEIPQ ALPGDNIGWN VRGIGKADVR
RGDVCGHTDN PPKVADTFVG QIVVLQHPSA ITAGYTPVFH AHTSQIACQL IELNKKLDPK
SGQVKEENPT FLKAGDAAIV TIKPTKPMVI EPVKEIPQLG RFAIRDMGMT IAAGMCMSVK
QK
|
|---|
| |