Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mbar_A3643 |
Symbol | |
ID | 3624587 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanosarcina barkeri str. Fusaro |
Kingdom | Archaea |
Replicon accession | NC_007355 |
Strand | + |
Start bp | 4689330 |
End bp | 4695269 |
Gene Length | 5940 bp |
Protein Length | 1979 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637702476 |
Product | TPR domain-containing protein |
Protein accession | YP_307087 |
Protein GI | 73671072 |
COG category | [N] Cell motility [R] General function prediction only [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3063] Tfp pilus assembly protein PilF [COG4783] Putative Zn-dependent protease, contains TPR repeats |
TIGRFAM ID | |
| 

|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | TTGGTTATCA ATCACGATGA AGCTTTTCAA AGAGGACTTG GCCTGATTAA ACAGAAAAGG TACGAAAAAT CAATTAATGT CTTCAACAAG ATTGTGGACA AGGATTCAGG TCACACAGGA GCTCTATTTA ACAGAGGACT TGCACTACTG AAAATTAAAA AACCAGAAGA AGCCCTCGAC TCCTTTGACC AGGTCCTGCA CTTCGAGCCC GAAAATTTTG ATGCCCTGTA CAAAAAAGGA ATTGCTCTGG CCACCCTTGA AAAGTTTGAA GCAGCTCTCG AAACTTATGA CAACGCACTC GAAATAAATC CTGACAATCC AAAAATCTGG TACCAAAAAG GACTGGCGTT TGCTGAACTG GAAAAAAATG AGGCTTCAAT TCTTTGTTTT GAGAAAGCAA TTGAGCTTGA ACCGGAATGC GGAAGCGCCT GGTATGCCCG AGGCACCGTA ACTGGAAAAA CCGGCAACTA CGAAGAAGCA CTGGAATGTT TTGAGCATGC ACTTGAGATC AACCCGAAAA ACTCAGACGC TTGCTACTCA AAAGGCCTGG TTCTTGCAAA TCTTGAGAAG TATGGAGAAG CGCTGGAATG CTTTGATTCT CTGATTCGAG AAAAACCCAG ACATAAAGAT GCCTGGAAAC AAAAATATTT TTCGTTGATA AAGCTGGGGA AGAACGAAGA AGCTCTGGAA TGTGTTGACG CATTTTTAAG GAAATTTCCT GTCAGTGAGA CTGCTCTCTA TCAGAAGGGT ATTCTTTTAA ACGAACTTTC CCGCTATGAA GATGCCGAGA AAACTTTTAC GAAAATTTTG AAAATAAACC CAGGAAATAA AGAAATCTGG CTCAAGAAAG GTCTTGCGCT TATCCAGCTG CTAAGGCTCA ATGATGCCAT AAAAGCCTTT GAAGAAGCTA TCAAGCTGGA TCCCACTTAT TTTGAAGCAT GGAATTACAA ATGCCTTGCT CTGATGAAGC TTGAGGTCTA TGAAGAAGCC CTTGAAGCCT TTGATTCTGT GCTTGAAATT TATCCAGAAA CTAAAGAAAT CTGGTACAAT AGGGCTCTTG CTCTCGTGAA ACTGCAGCAC TTTGGAGAAG CTGCAAAATC TTTTTCCAGA ACTGCCGAAC TGGACCCTGC ATACGGTGAT GCCCTGTACC AGCAGGGACG TTTGCTTGCC AGAGAAGGAA AGTATGAAGA AGCCCTCAAA GCCTTCGATT CCATGCTTGA ACAAAATCCA GAATTTATTA AGGCCCAAAA ACTCAGGGGC ACTATGCTGA TCAAGTTAGG CCGTATCGAA GAGGCTCTTG ACTCTCTTGC ACAGAGCCTT GAAAAAGAAC CCGAAAATTA TGGGCTCTGG CTGCAGCAAG GATTAATCCT CCTTGATAAT GGAAAATTCG AGCCTGCCCT GAAAGCTCTT GAGAAAGTTG CGGAACTCAA ACCTGATAAC GACGCTTGCT GGATGAATAA GGGATATGCA CTCTATTCCA TGGATCGCTA TGAAGAAGCT CTCGAAGACT TTGAAGAAGG TCTGCGGCTA AACCCGTATC TTGAGAAAGG ATGGAATAAT AAAGGAATAG TGCTGGGAAA ACTTGGAAGA ACTGAAGAAG CCCTTGAAGC TTTTGAAAAA GCTGTGAGCC TCAGGCCTGA CTTCGAAGAT GCCTGGAAAA ATAGAGGACT GATTTTGCTG GCTGTTGATG ACTATGAAAA AGCCAGCGAA GCCTTTGACG AAGTTCTTAA AACAAATCCT GAAGACCTTG ATTCCATTTA CAACAGAGGA ACAGCCCTGC TAAAACTAGG AAAAACAGAA ACTGCCCTGG AATGTTTTGA AAAAATCCTG TCCCTTAATC CCGATTATCC CGATCTATTA TATAGCCTTG CGGTTGCGCA GGCGAAACTA GGAAAGCAGG AAGAAGCCCT GGAAACTTTT GAAAAACTAG CTGCTAAAAA TCCCGAAGAT CTGAAAATCC AGCGCAGGAA AGGAAAATTT GCAATGGAAA TCGGAAAGTA TGATACTGCG CTTCAGGCTT TTGATCAGGT GCTCAGTGAA AAGCCGGAGT CCAGGGAAGC CTGGTATAGA AAAGGGCTTG CCCTGATAAA ACTGAAACGC TTTGAGGAGG CTATAACAGC CTTTGACGAA GTAATTGTAA GAAATCTAAA TAATAAAGAG ATAAGTAACT CCGATTATGA GGAGCTAAAA AATCTCGATC GTGATGACAT AGATAACCCA GCACGTGATG AGACAAAGAG GCCTGATTAC GAAGACGAGA ATCCTGATTA CGAGGATGAG AATTCTGATT ACGAGAACGC TCGTACTTAC AAAGGATTTG CGCAAATGCA GCTTGAAAGG TATCTCCCTG CCCTGAAAAC CTTTGAGAGC GCTCTTGAAG AAAAGCCGAA TTCCGATATT CTCTGGTACT ACAGAGGTCT TAGCCTGTAT AGGATAAATA TGTTAGAGGA AGCAGCGTGT GCTTTTGAGT CCTCAGTTCG CCTTAATCCT GAAATGAAGG AAGCCCTGGA GTACAGAGCC ATCTGTCTGT TTGAAACCGA ACAATACAAA GCTGCCCTGA AGGCTCTTGA AGCTGTACTT GAAGGAAATC CAGAGAACCT TTCTGCACTC CATAAAAAAG CTATTTGTTT CCTGCAGTTA AAGAAATACA AATCCGGAGC TGAAACCCTT TTGAGAGTAC TGGAACTTGA CCCTAACAAC AAAGAAGTAA AGTTTGAGCT AGGAATCGCC AGTTTCGAAT CCGGAGAATA CAATAAAGCC CTATCTCTTT TTGAAGAAGT AAGTGAGGGC TCAGATGACT CTTTTGTATA CTGTCCTGAA AAAAACTCAT ATGAACTAAA TAACTCTGAA CAAAATGTTT CTGAACAAGG CATTTCTGAA CAAAACTTTT CTGAACAAAA TAACTCTGAA CAAAACTTTT CTGAACAAAA TAACTCTGAA CAAAACTTTT CTGAACAAAG TATCTCTGAA CAAAATAACT CTAATCAAAA ATTCTCTGAA CAAAATAACT CCAAGCAAAA ATTCTCTGAA CAAAGTATCT CTAAAGAAAA GTACTCTTCG TTCTACTGGA AAGGGCTTGT ACTTATAAGA CTGGAAGCTT ACGAAAGAGC GCTTGAGGTT TTTTCAAGGC TTACCGAAAA TAATCCTCTG TTTGTAGAGG CATGGTATTT GAAAGGGATA TCCCATTCAA AACTGAAGCA GCATAAAGAA GCAGCAAAGG ATTTTGAGAA AGTCCTTGAG CTTGACCCTG CTTATCAGGA TACATGTTAC CAGTTGGGAC TTTCCTATTT TGAGCTTGGG AACTTTGAGG AAGCAATTAG GGTTTTTGAA TCCGCCCTGA AAATGGATCC TGAAAACCTT GATGCTCTTT ACATGAGAAG CCTCGCTTTA CTGCGGTCGA AGAGATATGG AGAATCGGCC TCGGGTTTCA GGGAGGTCCT TAAAAGAAAT CCATCCGATA CCGAGGCTCT TGCACACCTG AGTACAGCCT CCTTCAAGCA GGGGTTTTAT GAAGAAGCCC TTGGACTCTT TGATCAGGTT CTAAGCAAGA ACCCGGAGCG AAAAACTGTC CTTTTCAGGA AAGGAGTTGC TTTAAAAGCC CTTGGGGAAG TAAAGAGGGC TTCGACTATT TTTGATTCTG TCCTTAAATT GAAGCCGGAC TGCACTTATG CACTTGAACA AAAAGCCTAT ACTCACTTCG AGCTTGAGGA ATATCCAGAG GCCGTTGAAG CATTTAAGAC GGCACTGGAA TATTGCCAGA AAAAAGAAGA TCTATATTAC TACAGGGGTA TTGCCTTTTT CAGGCTTGGG AATTTTGAAG AAGCCGTAAG ATCCTTTGAA AATGCTCTTG ATCTCGGCTG CCAGCAACCC GAAATTTCTT ATTATACAGG AATCGCCTAC TTCGAAAACA GAGAATATGA AAAAGCCGTG GAAATCTTCA ATGCCATCCT TGATTCCGGG GCACTTGATC TTGAAATACT GTACAAAAAA GCCCTGGCAC TTTTCGAACT TGAAAAGCCA GAAGAAGTAG TTTCTACAGT TTATACTCTT CTCGAACTTG AAACCGAGAA CTTTAATATT AAAGACGCTG GAAAGTTTGA AGAAGAAAAC TATGAGGAAA GCGCAGGAAA AGAAAGCATA GGAGAAGAAA ACGCAGGAGA AATTCCAGCT TTCGAGAATA CAAAAGCTTT TGAAGAACTC CTAGAAAAGT TTACATTTTC TCTGATACAG CTTGGAAGAT ACGAAGAAGC CCTGCTACCT CTTGGAAAAC TTACAGCAAG TGAATCGGCT TCAAAAGAGG CCCTTTACAG CAAAGGGATT GTGTTTCAGG AGCTCGGCAG ATCTGAGGAG GCCCTTGAAA TATTTTCGGA ACTTCGTTTC CTTTATCCTG ACTTTGAAAA AGCCTGGTAT AGAAGAGGGC TCATTCTATT TTCTCTTGGA TACTATGTTG AAGCTCTGGA TTCATTCGAA CAGGCTGCCC TGGAAGATCA GACAGAAATC CCTGAAGAAA TTGACGAATT AAGCCTGGAC GAAACTCAGA GAGAAAAAAT GAGAGAAAGC CCTGAGTTAG AAGATGAAAC AAGATTAGAA GATAAGTTTG AATTAAAAGA GAAATTAAGT GAAACTGAAC TCGAAGATGT CTGGATGAAA ATGGGGCTTT CCCAGCTCAA ACTGGAACAC TATGAAGCCG CCATCGAGAT ATTTGAGAAA CTTCTTGAAG TAAAACCCGA GGCTTCAGAC CTCTGGTATG TAGCAGGGCT CGCTCTAAGG GGGCTTGACC AGGATGAACA AGCCGTTGAA GCTTTTGAAA ATGCCGTGGA ACTTGATCCA GCTCTGGAAG CTGCCTGGGA ACAGATAGGG CTTTCCCTTC TTAGATTGAA TATGTATGAA GAAGCAAGCC AGGCTTTCAG TTCTGCTCTA ACCCTGAAAC CTGACAACGT AAATGCTCTC TACAGCCGAT CAGAGGCCAG TTTCCAGCTC CAGCACTTTG AGGAAGCAGC TCAGGACCTC GAAAAAGTAC TCCTGTCCGC CCCTGATTTT TTGAATTCTA TTGAAGCCTG TTACAGGCTC GGGATTGCCA GAATGGAGCT TCAGGAGTGC GAAAAAGCTC TTGAGGCTTT TGATATAGTT TTGCAGCAGG ACCCGGCGCA TAGGGAAGCT CTCTATTATA GAGGGCTTGT GCTTTTCAAC CTGAGTGAAT ACGAAGCTGC CGCTGAGACT TTTGGAATGC TGCTGGAAGC CTCTCCCGAA GACCCTGAAA GCTTGAACTA CCTCGGGCTC TGCCTGCTGG AACTCGAAAG TCCGGAGGCG GCACTGAAAG CCTTTGAAAA AGCCGCTCTT TTCAATCCGA AGAATGAAGA AACTCTGTAT AATGCAGCCA CGACTCTTAT CAAGCTTAAC CGGCCCCAGG AATCAATTGA CTATTTTGAC CGCATCCTTG ACATTTCCCC AGAGAATCTC GATGTCCTGA ACTACAAAGG AATCGCGTTC TGCAAGCTTG AAATGTACAG GGAAGCCCTG AAAGCCTTTG ACCTTGCACT GGAAAAAGAC CCTGAAAACA TCAAGGCAAT TTATAGTGTA GGAGTTGTCT GCTTCAAACA GAAAATGTAT GAAACTGCCT GCAGGGCCTT TGACGAAGCT CTTGCCATTA ACCCCTGGCA CGAGCAGTCA CTGAAATATC TCGGGATATC TCTTGCAAAA ATAGAAGAAT ATGAGGATGC CCTGAGAACC TTTGACAGGC TGCTCAGGAT AAGACCTCAC GATGTGCAAG CTATGAATTA CAGGGGAGTT ATCCTCGGAA AACTGGGAAA GTATACCGAG GCCATAAACA CCTTCAATGA AATCCTTCGC CTCTATCCCG AAATGGCAGA CGCGAAAAGG AAACTGGAAG CCTTAAAATG CATTGAAAAC AAAGATGATT CCAGTGAAGA TCTCTACTAA
|
Protein sequence | MVINHDEAFQ RGLGLIKQKR YEKSINVFNK IVDKDSGHTG ALFNRGLALL KIKKPEEALD SFDQVLHFEP ENFDALYKKG IALATLEKFE AALETYDNAL EINPDNPKIW YQKGLAFAEL EKNEASILCF EKAIELEPEC GSAWYARGTV TGKTGNYEEA LECFEHALEI NPKNSDACYS KGLVLANLEK YGEALECFDS LIREKPRHKD AWKQKYFSLI KLGKNEEALE CVDAFLRKFP VSETALYQKG ILLNELSRYE DAEKTFTKIL KINPGNKEIW LKKGLALIQL LRLNDAIKAF EEAIKLDPTY FEAWNYKCLA LMKLEVYEEA LEAFDSVLEI YPETKEIWYN RALALVKLQH FGEAAKSFSR TAELDPAYGD ALYQQGRLLA REGKYEEALK AFDSMLEQNP EFIKAQKLRG TMLIKLGRIE EALDSLAQSL EKEPENYGLW LQQGLILLDN GKFEPALKAL EKVAELKPDN DACWMNKGYA LYSMDRYEEA LEDFEEGLRL NPYLEKGWNN KGIVLGKLGR TEEALEAFEK AVSLRPDFED AWKNRGLILL AVDDYEKASE AFDEVLKTNP EDLDSIYNRG TALLKLGKTE TALECFEKIL SLNPDYPDLL YSLAVAQAKL GKQEEALETF EKLAAKNPED LKIQRRKGKF AMEIGKYDTA LQAFDQVLSE KPESREAWYR KGLALIKLKR FEEAITAFDE VIVRNLNNKE ISNSDYEELK NLDRDDIDNP ARDETKRPDY EDENPDYEDE NSDYENARTY KGFAQMQLER YLPALKTFES ALEEKPNSDI LWYYRGLSLY RINMLEEAAC AFESSVRLNP EMKEALEYRA ICLFETEQYK AALKALEAVL EGNPENLSAL HKKAICFLQL KKYKSGAETL LRVLELDPNN KEVKFELGIA SFESGEYNKA LSLFEEVSEG SDDSFVYCPE KNSYELNNSE QNVSEQGISE QNFSEQNNSE QNFSEQNNSE QNFSEQSISE QNNSNQKFSE QNNSKQKFSE QSISKEKYSS FYWKGLVLIR LEAYERALEV FSRLTENNPL FVEAWYLKGI SHSKLKQHKE AAKDFEKVLE LDPAYQDTCY QLGLSYFELG NFEEAIRVFE SALKMDPENL DALYMRSLAL LRSKRYGESA SGFREVLKRN PSDTEALAHL STASFKQGFY EEALGLFDQV LSKNPERKTV LFRKGVALKA LGEVKRASTI FDSVLKLKPD CTYALEQKAY THFELEEYPE AVEAFKTALE YCQKKEDLYY YRGIAFFRLG NFEEAVRSFE NALDLGCQQP EISYYTGIAY FENREYEKAV EIFNAILDSG ALDLEILYKK ALALFELEKP EEVVSTVYTL LELETENFNI KDAGKFEEEN YEESAGKESI GEENAGEIPA FENTKAFEEL LEKFTFSLIQ LGRYEEALLP LGKLTASESA SKEALYSKGI VFQELGRSEE ALEIFSELRF LYPDFEKAWY RRGLILFSLG YYVEALDSFE QAALEDQTEI PEEIDELSLD ETQREKMRES PELEDETRLE DKFELKEKLS ETELEDVWMK MGLSQLKLEH YEAAIEIFEK LLEVKPEASD LWYVAGLALR GLDQDEQAVE AFENAVELDP ALEAAWEQIG LSLLRLNMYE EASQAFSSAL TLKPDNVNAL YSRSEASFQL QHFEEAAQDL EKVLLSAPDF LNSIEACYRL GIARMELQEC EKALEAFDIV LQQDPAHREA LYYRGLVLFN LSEYEAAAET FGMLLEASPE DPESLNYLGL CLLELESPEA ALKAFEKAAL FNPKNEETLY NAATTLIKLN RPQESIDYFD RILDISPENL DVLNYKGIAF CKLEMYREAL KAFDLALEKD PENIKAIYSV GVVCFKQKMY ETACRAFDEA LAINPWHEQS LKYLGISLAK IEEYEDALRT FDRLLRIRPH DVQAMNYRGV ILGKLGKYTE AINTFNEILR LYPEMADAKR KLEALKCIEN KDDSSEDLY
|
| |