| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A3472 |
|---|
| Symbol | |
|---|
| ID | 3625046 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 4451959 |
|---|
| End bp | 4454091 |
|---|
| Gene Length | 2133 bp |
|---|
| Protein Length | 710 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637702301 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_306925 |
|---|
| Protein GI | 73670910 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1107] Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 8 |
|---|
| Fosmid unclonability p-value | 0.00128156 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGATTAAGG AATGTCCAGA CTGCCACGGG CGTGGCTATG AAGTTGTTTC AACTGAAATC
TGCCCTCAGT GTAAGGGCAA AGGTAAATCA AAATCAATTG ATTTCATGAA AATGTCAGAA
AAAAATCTTG ACAGCATTTT AAAAAATGGT GCTGCATGTG AGAAATGTAA AGGTACTGGA
AGTATTGAAG TAACAACTCC CTGTAAAACC TGTAATGGTC TTGGAAAGAT ATACACATGC
AAGGTTTGTG GAGCACGTAT CGAGAACCCT CAGGACCCCG ATGAAGAAGT ATGTGATTCC
TGTTCCCATT CTCAGTATGT TTATGCTCTT GACGAGTCCT GCGACCTTAA GGACGTGGAA
GCAGGAAAAC TTTACCACGG GGTAGTGAGC AGTAAAGCTT CTTTTGGGGT CTTTGTCGAC
TTTAATCCTC ATGTAAGAGG ACTTATGCAC TCTAGCAATA TCGTTGTTTC TCCTGAAGTA
GGGGATTCCG TGATTGTTCT GGTAAAAAGC ATCAAGGCCG GAGGAAAGCT GGATCTGATA
CCTAAAACCA TTAAAAAATA CGAAACTGTC GAGCTTGAAA AGGAGCTTCC ACTCAAGAAT
TCAGCTGAAA TCGACTCCAG TATGAAAGGC AAGCTCCTCA GAATCGAAGG AGAGGTAATT
CAGGTAAAGC AGACCAGCGG GCCCACGATT TTCACAATTA GCGATGAGGG AGGCTTTGTG
CCCTGTGCAG CCTTTGAGAG TGCAGGGAAA AGGTCCTATC CGCATATTGA TGTAGGAATG
ATTGTTTCCA TTACCGGAGA AGTGACTCTG CGAGATGACC AGATCCAGAT CGAGGTCATG
AGCATGAAAT TGCTGACAGG AGAGAAGGAA GCAGTTGTCA AGGGCAGAGT TGAGAGAGTA
ATTGATGAAA AGGCATCTCC TGCGGATATT CCTTTCCTTG TCCAAAGCGA GATTATGGAG
AAACTTAAAC CCAGGATGCT CCATGTTGCC AAAGAAATCA AAAAAGCTAT TCTCCATTCA
ACCCCGATTA TTCTAAGGCA TCATGCCGAT GCTGATGGCA TTACTTCGGC AATTGCAATT
GAAAGGGCGA TCCTGCCCCT TATTACGGAA ATTGGGGGAA TGGATGCGGA ATATTATTTC
TACAAGCGTG CTCCGTCCAA AGCTCCTTTT TATGAACTTG CCGATGTTAC GAGGGATATT
TCGTTTGCGC TTGAAGACCT TTCCAGACAT GGGCAGAAAA TGCCGCTTAT AATTCTCGTA
GACAACGGAT CAACAGAAGA AGACGTACCT TCAATGCGGC AGGCCAAAGT CTATGGAATC
GATATGCTTG TTATCGACCA CCATCATCCG GATGAGATTG TTGACCAGTA CCTGATAGGG
CATGTAAATC CTGCGCATGT AGGAGGGGAT TTCGGAGTCA CTGCCGGAAT GCTCTGTGCT
GAAGTCGCTC GTATGATTAA TCCCGACATT AGCGATACAA TAAAACATCT CCCAGCGGTT
TCAGCAGTCG GAGACCGTTC AGAAGCTCCG GAAGCTGAAA GGTATATCTC TCTTGTCTCG
GACCGTTATA CTCTTGAAGA GTTGAAGGAA ATGGCTCTGG CCCTGGACTA CGAACAGTTC
TGGCTGAAAT TCAGTAGTGG AAAGGGCCTT ATCGATGATA TTCTGGACCT TGGAGATCAT
GAAACCCATA AAAACCTTGT TTCCCTGCTA TGCGAACAGG CAAATACCAT GATCCAGGAC
CAGCTTGAGA CCTGCCTCTT TAATGTAAAG TCCCAAAAAC TGGCAAATGG AACCATCATG
AACGTGATAG ACGTTGAAAA CTACGCCCAG AAATTCACCT TCCCGCCACC AGGAAAGACT
TCAGGAGAAG TTCATGACGT GCTTACCAAA AAATATCCGG ATAAACCCGT GGTAACCATT
GGATACGGCC CTGACTTTGC GGTCATCCGT TCAAAGGGTG TGCTCATGAA TATTCCGAAA
ATCGTCAGGG AACTCAGGGA AGAAATGAAA GGTGCAGGTG TCAGCGGAGG AGGACATCTG
GTTGTAGGCA GTATCAAATT TGTAGAAGGA ATGAGAACTG AGGTGTTATC AAGGCTTGCC
GAAAAGATAG CAGCCACCGA GGTTGAATAT TAA
|
|---|
| Protein sequence | MIKECPDCHG RGYEVVSTEI CPQCKGKGKS KSIDFMKMSE KNLDSILKNG AACEKCKGTG
SIEVTTPCKT CNGLGKIYTC KVCGARIENP QDPDEEVCDS CSHSQYVYAL DESCDLKDVE
AGKLYHGVVS SKASFGVFVD FNPHVRGLMH SSNIVVSPEV GDSVIVLVKS IKAGGKLDLI
PKTIKKYETV ELEKELPLKN SAEIDSSMKG KLLRIEGEVI QVKQTSGPTI FTISDEGGFV
PCAAFESAGK RSYPHIDVGM IVSITGEVTL RDDQIQIEVM SMKLLTGEKE AVVKGRVERV
IDEKASPADI PFLVQSEIME KLKPRMLHVA KEIKKAILHS TPIILRHHAD ADGITSAIAI
ERAILPLITE IGGMDAEYYF YKRAPSKAPF YELADVTRDI SFALEDLSRH GQKMPLIILV
DNGSTEEDVP SMRQAKVYGI DMLVIDHHHP DEIVDQYLIG HVNPAHVGGD FGVTAGMLCA
EVARMINPDI SDTIKHLPAV SAVGDRSEAP EAERYISLVS DRYTLEELKE MALALDYEQF
WLKFSSGKGL IDDILDLGDH ETHKNLVSLL CEQANTMIQD QLETCLFNVK SQKLANGTIM
NVIDVENYAQ KFTFPPPGKT SGEVHDVLTK KYPDKPVVTI GYGPDFAVIR SKGVLMNIPK
IVRELREEMK GAGVSGGGHL VVGSIKFVEG MRTEVLSRLA EKIAATEVEY
|
|---|
| |